Variant report

Variant	rs74024968
Chromosome Location	chr16:76311334-76311335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr16:76310989-76311364	SK-N-SH_RA	brain:	n/a	n/a
2	POLR2A	chr16:76310879-76311471	H1-neurons	neurons:	n/a	n/a
3	JUND	chr16:76311158-76311357	H1-hESC	embryonic stem cell:	n/a	n/a
4	REST	chr16:76310303-76311804	H1-neurons	neurons:	n/a	n/a
5	POLR2A	chr16:76310885-76311693	H1-neurons	neurons:	n/a	n/a
6	REST	chr16:76310810-76311470	H1-neurons	neurons:	n/a	n/a
7	MXI1	chr16:76309772-76311812	SK-N-SH	brain:	n/a	n/a
8	ZNF143	chr16:76311128-76311475	H1-hESC	embryonic stem cell:	n/a	n/a
9	RAD21	chr16:76310936-76311393	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
CNTNAP4	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56993349	0.82[AFR][1000 genomes]
rs57849035	0.81[AFR][1000 genomes]
rs74024960	0.91[AFR][1000 genomes]
rs74024969	1.00[AFR][1000 genomes]
rs74024976	0.98[AFR][1000 genomes]
rs74024979	0.95[AFR][1000 genomes]
rs74024995	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1064607	chr16:75787129-76449101	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1065794	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv542961	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1059162	chr16:75929348-76730816	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv572995	chr16:75935025-76708417	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv572996	chr16:75935025-76735249	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv817220	chr16:75939705-76735383	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1056021	chr16:75955522-76729765	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv542962	chr16:75955522-76729765	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv906935	chr16:76031737-76453110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv906936	chr16:76031737-76768178	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv817549	chr16:76067068-76582099	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv833285	chr16:76136345-76345398	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1065644	chr16:76166579-76475634	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv869200	chr16:76227867-76695732	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv833286	chr16:76243730-76444283	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv573018	chr16:76271568-76318640	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	esv2763142	chr16:76271660-76461841	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv573019	chr16:76272617-76318640	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv573020	chr16:76277895-76318640	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76310400-76315200	Active TSS	Brain Anterior Caudate	brain
2	chr16:76310600-76313400	Active TSS	Brain Angular Gyrus	brain
3	chr16:76310800-76311400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr16:76310800-76311600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr16:76310800-76311600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr16:76310800-76311600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:76310800-76311600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
8	chr16:76310800-76311600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
9	chr16:76310800-76312200	Active TSS	Fetal Brain Male	brain
10	chr16:76310800-76313000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr16:76310800-76313400	Active TSS	Brain Substantia Nigra	brain
12	chr16:76310800-76315400	Active TSS	Brain Cingulate Gyrus	brain
13	chr16:76310800-76315400	Active TSS	Brain Hippocampus Middle	brain
14	chr16:76310800-76315400	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr16:76311000-76311400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr16:76311000-76311400	Active TSS	H9 Cell Line	embryonic stem cell
17	chr16:76311000-76311400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr16:76311000-76311400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr16:76311000-76311400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
20	chr16:76311000-76311400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr16:76311000-76311600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr16:76311000-76311600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
23	chr16:76311000-76311600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr16:76311000-76312800	Active TSS	Fetal Muscle Leg	muscle
25	chr16:76311000-76314800	Active TSS	Fetal Brain Female	brain
26	chr16:76311200-76311400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr16:76311200-76311400	Bivalent/Poised TSS	Fetal Lung	lung
28	chr16:76311200-76311400	Bivalent Enhancer	HMEC	breast
29	chr16:76311200-76311600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr16:76311200-76311600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr16:76311200-76314800	Active TSS	Brain Germinal Matrix	brain

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