Variant report

Variant	rs74025050
Chromosome Location	chr15:77346658-77346659
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77335393..77337440-chr15:77346087..77347874,2	MCF-7	breast:
2	chr15:77344875..77348110-chr15:77358726..77362054,4	MCF-7	breast:
3	chr15:77345051..77347065-chr15:77356720..77358399,2	MCF-7	breast:
4	chr15:77345083..77346741-chr15:77358718..77361671,2	K562	blood:

Variant related genes	Relation type
ENSG00000259652	Chromatin interaction
ENSG00000260787	Chromatin interaction
ENSG00000269951	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57769132	1.00[AMR][1000 genomes]
rs74025049	1.00[AMR][1000 genomes]
rs74025051	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74025053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74025055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77318400-77350600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:77321200-77362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:77326800-77349800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:77327800-77346800	Strong transcription	Primary B cells from cord blood	blood
5	chr15:77330000-77352000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:77330000-77352200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:77330200-77352400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:77330600-77350200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:77333200-77351200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:77333800-77349600	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr15:77333800-77351000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:77334000-77348600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:77334200-77349600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:77335400-77347400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:77337800-77348400	Weak transcription	Psoas Muscle	Psoas
16	chr15:77337800-77352200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:77338000-77348400	Weak transcription	Ovary	ovary
18	chr15:77338200-77352600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:77339000-77362000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:77339200-77347000	Weak transcription	Brain Angular Gyrus	brain
21	chr15:77339200-77350000	Weak transcription	Esophagus	oesophagus
22	chr15:77339200-77352000	Weak transcription	Fetal Brain Male	brain
23	chr15:77339200-77352200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:77339200-77358000	Weak transcription	Colonic Mucosa	Colon
25	chr15:77339400-77347600	Weak transcription	Gastric	stomach
26	chr15:77339400-77348800	Weak transcription	Aorta	Aorta
27	chr15:77339400-77359200	Weak transcription	Right Ventricle	heart
28	chr15:77339600-77349200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:77339600-77352400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:77339800-77350600	Weak transcription	Brain Substantia Nigra	brain
31	chr15:77339800-77352200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:77340400-77351800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr15:77341200-77349200	Strong transcription	Primary hematopoietic stem cells	blood
34	chr15:77341200-77349400	Strong transcription	Fetal Muscle Leg	muscle
35	chr15:77341400-77347800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:77341600-77347800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:77341600-77348400	Strong transcription	Fetal Intestine Large	intestine
38	chr15:77341600-77349200	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr15:77341600-77349400	Strong transcription	Fetal Thymus	thymus
40	chr15:77341600-77349600	Strong transcription	Fetal Muscle Trunk	muscle
41	chr15:77341800-77349400	Strong transcription	HSMM	muscle
42	chr15:77341800-77352200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:77342800-77346800	Strong transcription	Adipose Nuclei	Adipose
44	chr15:77343200-77347000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr15:77344200-77347600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:77344400-77347200	Strong transcription	Dnd41	blood
47	chr15:77344400-77352000	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr15:77344800-77348400	Weak transcription	Pancreas	Pancrea
49	chr15:77344800-77352000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr15:77345000-77347200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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