Variant report

Variant	rs74026014
Chromosome Location	chr16:70414654-70414655
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:38)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:70414237..70416453-chr16:70688010..70689674,2	MCF-7	breast:
2	chr16:70414208..70415886-chr16:70547779..70549708,2	MCF-7	breast:
3	chr16:70414121..70416776-chr16:70530231..70532622,2	MCF-7	breast:
4	chr16:70413028..70417887-chr16:70485225..70490092,12	MCF-7	breast:
5	chr16:70414002..70416837-chr16:70528746..70531200,2	MCF-7	breast:
6	chr16:70414009..70416973-chr16:70493742..70498097,6	MCF-7	breast:
7	chr16:70414508..70417180-chr16:70441027..70443828,2	MCF-7	breast:
8	chr16:70413215..70416772-chr16:70556199..70563150,13	MCF-7	breast:
9	chr16:70413405..70415222-chr16:70569213..70571197,2	MCF-7	breast:
10	chr16:70413604..70416842-chr16:70451256..70458476,7	MCF-7	breast:
11	chr16:70413843..70415964-chr16:70471001..70474023,3	MCF-7	breast:
12	chr16:70378223..70384231-chr16:70413255..70416872,7	MCF-7	breast:
13	chr16:70413177..70417869-chr16:70554702..70561133,15	MCF-7	breast:
14	chr16:70412847..70415449-chr16:70713492..70715384,2	MCF-7	breast:
15	chr16:70414029..70415549-chr16:70641112..70644013,2	MCF-7	breast:
16	chr16:70409036..70411924-chr16:70413991..70417469,3	K562	blood:
17	chr16:70395912..70398405-chr16:70414154..70417074,3	MCF-7	breast:
18	chr16:70413769..70415520-chr16:70779084..70781856,2	MCF-7	breast:
19	chr16:70412934..70415272-chr16:70540814..70543390,2	MCF-7	breast:
20	chr16:70321401..70326234-chr16:70413598..70415525,5	MCF-7	breast:
21	chr16:70412581..70417154-chr16:70486443..70491865,11	MCF-7	breast:
22	chr16:70359312..70361385-chr16:70413761..70415564,2	MCF-7	breast:
23	chr16:70414071..70417351-chr16:70678702..70681364,3	MCF-7	breast:
24	chr16:70413939..70417104-chr16:70480851..70482640,3	MCF-7	breast:
25	chr16:70414339..70417004-chr16:70465838..70469101,3	MCF-7	breast:
26	chr16:70403865..70404598-chr16:70414555..70415060,2	MCF-7	breast:
27	chr16:70414149..70416279-chr16:70469419..70471972,3	MCF-7	breast:
28	chr16:70413939..70416331-chr16:70682108..70684497,2	MCF-7	breast:
29	chr16:70413020..70418181-chr16:70497448..70510572,26	MCF-7	breast:
30	chr16:70411913..70419512-chr16:70432088..70435360,7	MCF-7	breast:
31	chr16:70413865..70416780-chr16:70516555..70519847,4	MCF-7	breast:
32	chr16:70413182..70415523-chr5:139025161..139027114,2	MCF-7	breast:
33	chr16:70414096..70415675-chr6:2988863..2990515,2	MCF-7	breast:
34	chr16:70413470..70415352-chr16:70682126..70684373,2	MCF-7	breast:
35	chr16:70404267..70407170-chr16:70413763..70415301,2	K562	blood:
36	chr16:70414402..70416490-chr16:70467448..70469871,2	K562	blood:
37	chr16:70414219..70416297-chr20:53291360..53294038,2	MCF-7	breast:
38	chr16:70408723..70414559-chr16:70414602..70419341,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000157368	Chromatin interaction
ENSG00000261777	Chromatin interaction
ENSG00000189091	Chromatin interaction
ENSG00000157350	Chromatin interaction
ENSG00000168872	Chromatin interaction
ENSG00000132613	Chromatin interaction
ENSG00000157353	Chromatin interaction
ENSG00000260111	Chromatin interaction
ENSG00000171604	Chromatin interaction
ENSG00000260156	Chromatin interaction
ENSG00000157349	Chromatin interaction
ENSG00000103051	Chromatin interaction
ENSG00000244041	Chromatin interaction
ENSG00000090861	Chromatin interaction
ENSG00000124588	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57281906	1.00[AMR][1000 genomes]
rs74024189	1.00[AMR][1000 genomes]
rs74026003	1.00[AMR][1000 genomes]
rs74026004	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026005	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026007	1.00[AMR][1000 genomes]
rs74026010	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026020	1.00[AMR][1000 genomes]
rs74026028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70409600-70416400	Weak transcription	K562	blood
2	chr16:70413200-70414800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr16:70413200-70415200	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr16:70413200-70415200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr16:70413400-70416000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr16:70413400-70416000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr16:70413600-70415200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:70413600-70416200	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr16:70413600-70416200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr16:70413800-70414800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr16:70413800-70415000	Flanking Active TSS	Fetal Muscle Leg	muscle
12	chr16:70413800-70415000	Flanking Active TSS	HUVEC	blood vessel
13	chr16:70413800-70415000	Flanking Active TSS	NH-A	brain
14	chr16:70413800-70415200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr16:70413800-70415200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr16:70413800-70415200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr16:70413800-70415200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr16:70413800-70415200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr16:70413800-70415200	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr16:70413800-70415600	Active TSS	H1 Cell Line	embryonic stem cell
21	chr16:70413800-70415600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr16:70413800-70415800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr16:70413800-70415800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr16:70413800-70416000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr16:70413800-70416000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr16:70413800-70416000	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr16:70413800-70416000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr16:70413800-70416000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
29	chr16:70413800-70416000	Active TSS	HSMMtube	muscle
30	chr16:70413800-70416200	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr16:70413800-70416200	Active TSS	H9 Cell Line	embryonic stem cell
32	chr16:70413800-70416200	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr16:70413800-70416200	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr16:70413800-70416200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr16:70414000-70414800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr16:70414000-70414800	Flanking Active TSS	Brain Substantia Nigra	brain
37	chr16:70414000-70414800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr16:70414000-70414800	Flanking Active TSS	Right Ventricle	heart
39	chr16:70414000-70415000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr16:70414000-70415200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
41	chr16:70414000-70415200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
42	chr16:70414000-70415200	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr16:70414000-70415200	Flanking Active TSS	Placenta	Placenta
44	chr16:70414000-70415600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr16:70414000-70415600	Active TSS	Fetal Intestine Large	intestine
46	chr16:70414000-70415600	Active TSS	Pancreas	Pancrea
47	chr16:70414000-70415600	Active TSS	Thymus	Thymus
48	chr16:70414000-70415600	Active TSS	GM12878-XiMat	blood
49	chr16:70414000-70415800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
50	chr16:70414000-70415800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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