Variant report

Variant	rs74026056
Chromosome Location	chr16:70524216-70524217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70522527..70524486-chr16:70532173..70534316,2	K562	blood:
2	chr16:70510715..70512224-chr16:70521529..70524306,2	MCF-7	breast:
3	chr16:70487117..70490003-chr16:70522933..70524555,2	MCF-7	breast:
4	chr16:70412713..70416394-chr16:70524042..70528993,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157353	Chromatin interaction
ENSG00000260111	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11864184	0.83[AMR][1000 genomes]
rs17885668	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	esv2830027	chr16:70473934-70558039	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70489400-70556400	Weak transcription	Stomach Mucosa	stomach
2	chr16:70501200-70535800	Strong transcription	Fetal Intestine Small	intestine
3	chr16:70501400-70535200	Strong transcription	Fetal Intestine Large	intestine
4	chr16:70501400-70536400	Strong transcription	Fetal Stomach	stomach
5	chr16:70504200-70524800	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr16:70504200-70532000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr16:70504400-70535200	Strong transcription	Liver	Liver
8	chr16:70506400-70535200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr16:70506600-70535400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr16:70511000-70527400	Weak transcription	Psoas Muscle	Psoas
11	chr16:70511400-70526200	Strong transcription	Thymus	Thymus
12	chr16:70511800-70524800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr16:70511800-70535600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr16:70512000-70524600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr16:70512000-70535400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr16:70512800-70533600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr16:70512800-70556400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr16:70513000-70528000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr16:70513000-70528600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr16:70513600-70527600	Weak transcription	Right Atrium	heart
21	chr16:70513800-70532200	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr16:70514000-70524400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr16:70514400-70524800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr16:70514400-70527800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr16:70516000-70530200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr16:70516200-70527200	Weak transcription	Small Intestine	intestine
27	chr16:70516800-70527000	Weak transcription	A549	lung
28	chr16:70516800-70527400	Weak transcription	HMEC	breast
29	chr16:70516800-70529400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr16:70516800-70529400	Weak transcription	HUVEC	blood vessel
31	chr16:70517400-70525000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr16:70517600-70527600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr16:70517600-70538800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr16:70518000-70527000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr16:70518000-70527200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr16:70518000-70545800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr16:70518200-70527400	Weak transcription	Right Ventricle	heart
38	chr16:70518400-70527000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr16:70518400-70527400	Weak transcription	NHEK	skin
40	chr16:70518800-70525800	Weak transcription	Osteobl	bone
41	chr16:70518800-70527000	Weak transcription	Brain Angular Gyrus	brain
42	chr16:70519000-70527400	Weak transcription	NH-A	brain
43	chr16:70519000-70529400	Weak transcription	Fetal Kidney	kidney
44	chr16:70519600-70526800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr16:70519800-70524600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr16:70519800-70525200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr16:70519800-70525800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr16:70519800-70532200	Strong transcription	Primary T cells from cord blood	blood
49	chr16:70519800-70533400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr16:70520000-70524600	Strong transcription	Brain Substantia Nigra	brain

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