Variant report

Variant	rs74026429
Chromosome Location	chr15:76604037-76604038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:423)
CpG islands
(count:122)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:423 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:76602914-76604266	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr15:76602755-76604226	GM12892	blood:	n/a	n/a
3	MAX	chr15:76603396-76604202	HepG2	liver:	n/a	n/a
4	POLR2A	chr15:76602871-76604217	GM12878	blood:	n/a	n/a
5	NFATC1	chr15:76603675-76604217	GM12878	blood:	n/a	n/a
6	REST	chr15:76603698-76604097	PANC-1	pancreas:	n/a	n/a
7	NFATC1	chr15:76603789-76604226	GM12878	blood:	n/a	n/a
8	E2F6	chr15:76603257-76604177	H1-hESC	embryonic stem cell:	n/a	chr15:76603904-76603916
9	NR2F2	chr15:76603636-76604188	K562	blood:	n/a	n/a
10	POLR2A	chr15:76603473-76604257	PANC-1	pancreas:	n/a	n/a
11	POLR2A	chr15:76602925-76604202	K562	blood:	n/a	n/a
12	POLR2A	chr15:76602986-76604192	GM18505	blood:	n/a	n/a
13	POLR2A	chr15:76603192-76604205	GM18951	blood:	n/a	n/a
14	TAF1	chr15:76603126-76604217	Hela-S3	cervix:	n/a	n/a
15	TCF12	chr15:76603446-76604184	ECC-1	luminal epithelium:	n/a	n/a
16	E2F4	chr15:76603475-76604142	K562	blood:	n/a	chr15:76603904-76603916
17	POLR2A	chr15:76603286-76604241	ProgFib	skin:	n/a	n/a
18	POLR2A	chr15:76603386-76604168	U87	brain:	n/a	n/a
19	YY1	chr15:76603032-76604116	K562	blood:	n/a	chr15:76603885-76603899 chr15:76603886-76603897
20	POLR2A	chr15:76602697-76604145	K562	blood:	n/a	n/a
21	EP300	chr15:76603659-76604105	SK-N-SH_RA	brain:	n/a	chr15:76603979-76603995
22	TAF1	chr15:76603595-76604278	MCF-7	breast:	n/a	n/a
23	PML	chr15:76603368-76604334	GM12878	blood:	n/a	n/a
24	MAX	chr15:76603097-76604298	HepG2	liver:	n/a	n/a
25	MAX	chr15:76602940-76604389	A549	lung:	n/a	n/a
26	FOXA2	chr15:76603552-76604211	A549	lung:	n/a	n/a
27	E2F6	chr15:76603112-76604284	H1-hESC	embryonic stem cell:	n/a	chr15:76603904-76603916
28	POLR2A	chr15:76603134-76604200	GM12892	blood:	n/a	n/a
29	RXRA	chr15:76603607-76604299	HepG2	liver:	n/a	chr15:76603936-76603949 chr15:76603936-76603949 chr15:76603936-76603949 chr15:76603935-76603949
30	GTF2B	chr15:76603019-76604113	K562	blood:	n/a	n/a
31	UBTF	chr15:76602949-76604197	K562	blood:	n/a	n/a
32	RCOR1	chr15:76603378-76604212	K562	blood:	n/a	n/a
33	POLR2A	chr15:76603491-76604237	SK-N-SH	brain:	n/a	n/a
34	ETS1	chr15:76603467-76604259	A549	lung:	n/a	chr15:76603734-76603745 chr15:76603736-76603752
35	SP1	chr15:76603170-76604329	A549	lung:	n/a	chr15:76603868-76603889 chr15:76603190-76603202 chr15:76603191-76603201 chr15:76603186-76603196 chr15:76603894-76603915 chr15:76603192-76603201
36	HEY1	chr15:76603389-76604191	K562	blood:	n/a	n/a
37	TCF7L2	chr15:76603709-76604214	PANC-1	pancreas:	n/a	n/a
38	TAF1	chr15:76603577-76604131	GM12878	blood:	n/a	n/a
39	SPI1	chr15:76603703-76604076	GM12878	blood:	n/a	n/a
40	MAX	chr15:76603396-76604123	K562	blood:	n/a	n/a
41	TAF1	chr15:76603333-76604160	HepG2	liver:	n/a	n/a
42	POLR2A	chr15:76603016-76604155	K562	blood:	n/a	n/a
43	POLR2A	chr15:76603549-76604106	A549	lung:	n/a	n/a
44	POLR2A	chr15:76602984-76604231	K562	blood:	n/a	n/a
45	NRF1	chr15:76603498-76604155	SK-N-SH	brain:	n/a	chr15:76603870-76603881 chr15:76603885-76603896
46	TAF1	chr15:76603608-76604101	GM12892	blood:	n/a	n/a
47	POLR2A	chr15:76603472-76604081	H1-neurons	neurons:	n/a	n/a
48	TAF1	chr15:76603453-76604126	SK-N-SH	brain:	n/a	n/a
49	GATA3	chr15:76603474-76604166	MCF-7	breast:	n/a	chr15:76603831-76603838 chr15:76603830-76603838 chr15:76603831-76603838 chr15:76603831-76603838
50	HNF4A	chr15:76603316-76604171	HepG2	liver:	n/a	chr15:76603540-76603552 chr15:76603934-76603952 chr15:76603538-76603553 chr15:76603937-76603949 chr15:76603538-76603553 chr15:76603540-76603552 chr15:76603472-76603494 chr15:76603937-76603949 chr15:76603539-76603551 chr15:76603937-76603949 chr15:76603936-76603949 chr15:76603539-76603553 chr15:76603937-76603950 chr15:76603523-76603531 chr15:76603936-76603950

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:76603987-76604037	HL-60	blood:	n/a
2	chr15:76603987-76604037	AG09309	skin:	n/a
3	chr15:76603987-76604037	HCPEpiC	choroid plexus:	n/a
4	chr15:76603987-76604037	HRE	kidney:	n/a
5	chr15:76603987-76604037	T-47D	breast:	n/a
6	chr15:76603987-76604037	Hela-S3	cervix:	n/a
7	chr15:76603992-76604042	NHDF-neo	bronchial:	n/a
8	chr15:76603987-76604037	HPAEpiC	pulmonary alveolar:	n/a
9	chr15:76603992-76604042	AG04449	skin:	fetal
10	chr15:76603987-76604037	HRPEpiC	eye:	n/a
11	chr15:76603987-76604037	HAEpiC	amniotic membrane:	n/a
12	chr15:76603987-76604037	U87	brain:	n/a
13	chr15:76603992-76604042	AG10803	skin:	n/a
14	chr15:76603992-76604042	PrEC	prostate:	n/a
15	chr15:76603987-76604037	HEK293	kidney:	embryo
16	chr15:76603992-76604042	Jurkat	blood:	n/a
17	chr15:76603987-76604037	AoSMC	blood vessel:	n/a
18	chr15:76603987-76604037	HNPCEpiC	eye:	n/a
19	chr15:76603992-76604042	HRCEpiC	kidney:	n/a
20	chr15:76603987-76604037	HIPEpiC	eye:	n/a
21	chr15:76603992-76604042	SK-N-SH_RA	brain:	n/a
22	chr15:76603992-76604042	RPTEC	kidney:	n/a
23	chr15:76603987-76604037	GM12891	blood:	n/a
24	chr15:76603992-76604042	A549	lung:	n/a
25	chr15:76603992-76604042	HRE	kidney:	n/a
26	chr15:76603992-76604042	BJ	skin:	n/a
27	chr15:76603987-76604037	HCT-116	colon:	n/a
28	chr15:76603987-76604037	HCM	heart:	n/a
29	chr15:76603987-76604037	MCF-7	breast:	n/a
30	chr15:76603992-76604042	Hela-S3	cervix:	n/a
31	chr15:76603987-76604037	BE2_C	brain:	n/a
32	chr15:76603987-76604037	AG09319	gingival:	n/a
33	chr15:76603987-76604037	NB4	blood:	n/a
34	chr15:76603992-76604042	T-47D	breast:	n/a
35	chr15:76603992-76604042	MCF-7	breast:	n/a
36	chr15:76603987-76604037	LNCaP	prostate:	n/a
37	chr15:76603992-76604042	U87	brain:	n/a
38	chr15:76603992-76604042	SK-N-SH	brain:	n/a
39	chr15:76603992-76604042	HAEpiC	amniotic membrane:	n/a
40	chr15:76603992-76604042	SK-N-MC	brain:	n/a
41	chr15:76603992-76604042	K562	blood:	n/a
42	chr15:76603987-76604037	SAEC	small airway:	n/a
43	chr15:76603992-76604042	IMR90	lung:	fetal
44	chr15:76603987-76604037	CMK	blood:	n/a
45	chr15:76603987-76604037	HMEC	breast:	n/a
46	chr15:76603987-76604037	HepG2	liver:	n/a
47	chr15:76603992-76604042	AG04450	lung:	fetal
48	chr15:76603992-76604042	AoSMC	blood vessel:	n/a
49	chr15:76603992-76604042	SAEC	small airway:	n/a
50	chr15:76603992-76604042	HCM	heart:	n/a

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76603682..76604209-chr22:19419697..19420202,2	HCT-116	colon:
2	chr15:76603268..76604108-chr17:41465695..41466359,2	Hela-S3	cervix:
3	chr15:76603595..76604138-chr2:54342354..54343006,2	HCT-116	colon:
4	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
5	chr15:76517181..76519721-chr15:76602211..76604425,2	K562	blood:
6	chr15:76577736..76580355-chr15:76602966..76605157,2	MCF-7	breast:
7	chr15:76603148..76604121-chr2:97001077..97001691,2	Hela-S3	cervix:
8	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
9	chr15:76603349..76604082-chr5:31532161..31532828,2	Hela-S3	cervix:
10	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
11	chr15:76602919..76604847-chr15:77361875..77364736,2	K562	blood:
12	chr15:76584959..76587924-chr15:76602984..76605259,2	K562	blood:
13	chr15:76603254..76604196-chr17:34900638..34901493,2	Hela-S3	cervix:
14	chr15:76603407..76604071-chr16:2204657..2205287,2	Hela-S3	cervix:
15	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
16	chr15:76603879..76604550-chr2:9695486..9696482,2	NB4	blood:
17	chr15:76573739..76576523-chr15:76603684..76605605,3	K562	blood:
18	chr15:76584135..76596152-chr15:76600630..76606670,15	MCF-7	breast:
19	chr15:76603305..76604106-chr2:100105951..100106601,2	Hela-S3	cervix:
20	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:

No data

Variant related genes	Relation type
ETFA	TF binding region
ETFA	CpG island
ENSG00000135945	Chromatin interaction
ENSG00000113360	Chromatin interaction
ENSG00000159556	Chromatin interaction
ENSG00000151694	Chromatin interaction
ENSG00000206630	Chromatin interaction
ENSG00000082213	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000271855	Chromatin interaction
ENSG00000005955	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000170634	Chromatin interaction
ENSG00000121152	Chromatin interaction
ENSG00000185608	Chromatin interaction
ENSG00000259514	Chromatin interaction
ENSG00000140391	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2203821	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520069	chr15:76602212-76609181	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76602000-76604200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:76602000-76604200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:76602200-76604200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:76602200-76604200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:76602200-76604400	Active TSS	Stomach Smooth Muscle	stomach
6	chr15:76602400-76604200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr15:76602400-76604200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:76602400-76604400	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr15:76602400-76604400	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr15:76602400-76604400	Active TSS	NHLF	lung
11	chr15:76602600-76604200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:76602600-76604200	Active TSS	Fetal Intestine Small	intestine
13	chr15:76602600-76604200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr15:76602600-76604200	Active TSS	Fetal Stomach	stomach
15	chr15:76602600-76604200	Active TSS	Lung	lung
16	chr15:76602600-76604200	Active TSS	Ovary	ovary
17	chr15:76602600-76604200	Active TSS	Psoas Muscle	Psoas
18	chr15:76602600-76604200	Active TSS	Right Atrium	heart
19	chr15:76602600-76604200	Active TSS	Right Ventricle	heart
20	chr15:76602600-76604200	Active TSS	Sigmoid Colon	Sigmoid Colon
21	chr15:76602600-76604200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr15:76602600-76604400	Active TSS	Fetal Intestine Large	intestine
23	chr15:76602600-76604400	Active TSS	Rectal Smooth Muscle	rectum
24	chr15:76602800-76604200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr15:76602800-76604200	Active TSS	H9 Cell Line	embryonic stem cell
26	chr15:76602800-76604200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
27	chr15:76602800-76604200	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr15:76602800-76604200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:76602800-76604200	Active TSS	Brain Substantia Nigra	brain
30	chr15:76602800-76604200	Active TSS	Colon Smooth Muscle	Colon
31	chr15:76602800-76604200	Active TSS	Left Ventricle	heart
32	chr15:76602800-76604400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:76602800-76604400	Active TSS	Brain Hippocampus Middle	brain
34	chr15:76602800-76604400	Active TSS	Fetal Kidney	kidney
35	chr15:76602800-76604800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:76603000-76604200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:76603000-76604200	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr15:76603000-76604200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:76603000-76604200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr15:76603000-76604200	Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr15:76603000-76604200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:76603000-76604200	Active TSS	Aorta	Aorta
43	chr15:76603000-76604200	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr15:76603000-76604200	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr15:76603000-76604200	Active TSS	Fetal Brain Female	brain
46	chr15:76603000-76604200	Active TSS	Pancreas	Pancrea
47	chr15:76603000-76604200	Active TSS	Small Intestine	intestine
48	chr15:76603000-76604400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:76603000-76604400	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr15:76603000-76604400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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