Variant report

Variant	rs74026914
Chromosome Location	chr15:77733578-77733579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77729375..77731568-chr15:77731785..77734606,3	K562	blood:
2	chr15:77710797..77713299-chr15:77731423..77733931,3	MCF-7	breast:
3	chr15:77731986..77734609-chr15:77750032..77751722,2	MCF-7	breast:
4	chr15:77726192..77730190-chr15:77730606..77733927,4	MCF-7	breast:
5	chr15:77710965..77713678-chr15:77732799..77735458,2	MCF-7	breast:
6	chr15:77728521..77730875-chr15:77731785..77733809,2	K562	blood:
7	chr15:77712579..77715186-chr15:77732353..77734903,2	K562	blood:

Variant related genes	Relation type
ENSG00000173517	Chromatin interaction
ENSG00000140382	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55792516	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56706584	1.00[EUR][1000 genomes]
rs59785453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74025103	1.00[EUR][1000 genomes]
rs74025317	1.00[EUR][1000 genomes]
rs74026911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77714000-77748600	Weak transcription	Placenta	Placenta
2	chr15:77714400-77739200	Weak transcription	Right Atrium	heart
3	chr15:77714400-77741600	Weak transcription	Fetal Thymus	thymus
4	chr15:77714600-77734400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:77714800-77739200	Weak transcription	Fetal Intestine Small	intestine
6	chr15:77715000-77740600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:77715400-77733800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:77715400-77737800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:77716000-77733800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:77716400-77734200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:77716400-77741400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:77716800-77738000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:77716800-77742600	Weak transcription	Hela-S3	cervix
14	chr15:77717000-77754400	Weak transcription	K562	blood
15	chr15:77717200-77739400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:77720000-77739400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr15:77720200-77743000	Weak transcription	Primary B cells from cord blood	blood
18	chr15:77723200-77738000	Weak transcription	Right Ventricle	heart
19	chr15:77727200-77741200	Weak transcription	Fetal Stomach	stomach
20	chr15:77727400-77747800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:77728000-77737600	Weak transcription	Left Ventricle	heart
22	chr15:77728200-77746200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:77728400-77738000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:77729200-77740600	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:77729400-77747200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:77729600-77748000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:77729600-77749200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr15:77729800-77740600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr15:77729800-77747200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:77730400-77748600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr15:77730600-77740200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:77730600-77758800	Weak transcription	Lung	lung
33	chr15:77732000-77735000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr15:77732400-77733600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:77732400-77733600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr15:77732400-77733600	Enhancers	HSMM	muscle
37	chr15:77732400-77734000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:77732400-77734200	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr15:77732600-77734600	Enhancers	Fetal Heart	heart
40	chr15:77732600-77735200	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr15:77732800-77733600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:77732800-77733600	Enhancers	Small Intestine	intestine
43	chr15:77732800-77733600	Enhancers	A549	lung
44	chr15:77732800-77734400	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr15:77733000-77733600	Enhancers	Psoas Muscle	Psoas
46	chr15:77733000-77734600	Enhancers	Stomach Mucosa	stomach
47	chr15:77733000-77735200	Enhancers	Colon Smooth Muscle	Colon
48	chr15:77733200-77733600	Enhancers	Rectal Smooth Muscle	rectum
49	chr15:77733200-77734000	Enhancers	Brain Hippocampus Middle	brain
50	chr15:77733200-77734000	Enhancers	Rectal Mucosa Donor 29	rectum

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