Variant report

Variant	rs74027737
Chromosome Location	chr15:78331548-78331549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78331100..78333926-chr15:78382964..78385819,2	K562	blood:

Variant related genes	Relation type
ENSG00000199633	Chromatin interaction
ENSG00000183476	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55676203	1.00[AFR][1000 genomes]
rs58839756	1.00[AMR][1000 genomes]
rs59230525	1.00[AMR][1000 genomes]
rs74027732	1.00[AMR][1000 genomes]
rs74027743	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78301400-78342200	Weak transcription	HMEC	breast
3	chr15:78303200-78342400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:78307200-78342000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:78316000-78332400	Weak transcription	Hela-S3	cervix
7	chr15:78317000-78344400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:78317400-78342600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:78317800-78344400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:78317800-78344400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:78320200-78334400	Weak transcription	Aorta	Aorta
12	chr15:78320400-78331800	Weak transcription	Esophagus	oesophagus
13	chr15:78321200-78343800	Weak transcription	NHEK	skin
14	chr15:78322200-78336600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:78322200-78341000	Weak transcription	Brain Germinal Matrix	brain
16	chr15:78322400-78336600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:78324000-78332200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr15:78324600-78334400	Weak transcription	Ovary	ovary
19	chr15:78325600-78337800	Genic enhancers	Fetal Thymus	thymus
20	chr15:78325800-78333600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr15:78326000-78331600	Enhancers	HUVEC	blood vessel
22	chr15:78326200-78332000	Genic enhancers	Fetal Intestine Small	intestine
23	chr15:78326200-78332800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:78326400-78331600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr15:78326400-78332000	Genic enhancers	Fetal Muscle Leg	muscle
26	chr15:78326600-78332000	Genic enhancers	Placenta	Placenta
27	chr15:78326600-78332000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
28	chr15:78327400-78339600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:78327600-78331600	Genic enhancers	Rectal Mucosa Donor 29	rectum
30	chr15:78327600-78332000	Enhancers	Primary hematopoietic stem cells	blood
31	chr15:78327600-78333600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr15:78327600-78351400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr15:78327800-78342000	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr15:78328000-78332200	Enhancers	Small Intestine	intestine
35	chr15:78328000-78334600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:78328000-78335400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr15:78328000-78336600	Weak transcription	Fetal Brain Female	brain
38	chr15:78328000-78336800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:78328000-78341800	Weak transcription	Fetal Brain Male	brain
40	chr15:78328200-78332000	Enhancers	Primary B cells from cord blood	blood
41	chr15:78328200-78334200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:78328400-78332200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:78328400-78332200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr15:78328400-78332400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:78328400-78333000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:78328400-78333400	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr15:78328400-78333800	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr15:78328400-78334000	Weak transcription	Osteobl	bone
49	chr15:78328400-78334200	Weak transcription	NHLF	lung
50	chr15:78328400-78334800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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