Variant report

Variant	rs74028206
Chromosome Location	chr15:83673653-83673654
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83668786..83671012-chr15:83671933..83674427,4	MCF-7	breast:
2	chr15:83512168..83513962-chr15:83673540..83675168,2	MCF-7	breast:
3	chr15:83670089..83673828-chr15:83675378..83682483,6	MCF-7	breast:
4	chr15:83668969..83671305-chr15:83672864..83675852,3	K562	blood:
5	chr15:83669361..83671818-chr15:83672867..83675852,3	K562	blood:
6	chr15:83480184..83483063-chr15:83673551..83675141,2	K562	blood:
7	chr15:83672818..83677219-chr15:83678356..83680913,3	K562	blood:

Variant related genes	Relation type
ENSG00000169609	Chromatin interaction
ENSG00000260608	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28656253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83655400-83675400	Weak transcription	Spleen	Spleen
2	chr15:83655800-83675600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:83655800-83679200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:83656000-83675200	Weak transcription	Esophagus	oesophagus
5	chr15:83656200-83677800	Weak transcription	Fetal Brain Male	brain
6	chr15:83656200-83679000	Weak transcription	Right Ventricle	heart
7	chr15:83656400-83679200	Weak transcription	Fetal Heart	heart
8	chr15:83656600-83674400	Weak transcription	HepG2	liver
9	chr15:83657600-83673800	Weak transcription	Fetal Intestine Small	intestine
10	chr15:83657800-83673800	Weak transcription	Brain Germinal Matrix	brain
11	chr15:83658000-83675000	Weak transcription	Lung	lung
12	chr15:83658000-83675200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:83658000-83679000	Weak transcription	Gastric	stomach
14	chr15:83658200-83674400	Weak transcription	Ovary	ovary
15	chr15:83658200-83676000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:83658600-83674200	Weak transcription	Dnd41	blood
17	chr15:83659800-83675200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:83659800-83675600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:83659800-83675600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:83664800-83674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:83665600-83679400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:83668400-83674000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:83669200-83674000	Weak transcription	Left Ventricle	heart
24	chr15:83669200-83675200	Weak transcription	Small Intestine	intestine
25	chr15:83669200-83675600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:83669200-83675600	Weak transcription	Brain Angular Gyrus	brain
27	chr15:83669200-83677200	Weak transcription	Aorta	Aorta
28	chr15:83669200-83678200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr15:83669200-83678800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr15:83669200-83679000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr15:83669400-83673800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr15:83669400-83673800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr15:83669400-83674000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:83669400-83674200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:83669400-83675200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr15:83669400-83675200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr15:83669400-83675400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:83669400-83675400	Weak transcription	Brain Hippocampus Middle	brain
39	chr15:83669400-83675400	Weak transcription	Colonic Mucosa	Colon
40	chr15:83669400-83675400	Weak transcription	NHLF	lung
41	chr15:83669400-83675600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:83669400-83675600	Weak transcription	Primary B cells from cord blood	blood
43	chr15:83669400-83675600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr15:83669400-83675600	Weak transcription	Brain Anterior Caudate	brain
45	chr15:83669400-83675600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:83669400-83675600	Weak transcription	Brain Substantia Nigra	brain
47	chr15:83669400-83675600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:83669400-83675600	Weak transcription	HSMMtube	muscle
49	chr15:83669400-83675600	Weak transcription	HUVEC	blood vessel
50	chr15:83669400-83675600	Weak transcription	K562	blood

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