Variant report

Variant	rs74028829
Chromosome Location	chr15:92690451-92690452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92690201..92691846-chr15:92709647..92712253,2	K562	blood:
2	chr15:92682991..92685535-chr15:92689557..92692167,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs74028827	0.94[AFR][1000 genomes]
rs74028830	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3410304	chr15:92690259-92690566	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:92648200-92692600	Weak transcription	NHLF	lung
3	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
5	chr15:92664000-92707000	Weak transcription	Liver	Liver
6	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
7	chr15:92666000-92704200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:92668600-92690800	Weak transcription	Brain Angular Gyrus	brain
9	chr15:92669600-92703000	Weak transcription	Brain Anterior Caudate	brain
10	chr15:92671600-92708000	Weak transcription	Gastric	stomach
11	chr15:92671800-92707800	Weak transcription	Colonic Mucosa	Colon
12	chr15:92671800-92709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:92672000-92704200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:92672200-92695600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:92672200-92703200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:92672600-92691200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:92673400-92692600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:92674800-92707800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:92678600-92692400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:92678600-92701000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:92679200-92698800	Weak transcription	Thymus	Thymus
22	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr15:92684200-92701400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr15:92684600-92701000	Weak transcription	NHEK	skin
26	chr15:92684800-92701400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:92685200-92691600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:92685200-92701000	Weak transcription	HMEC	breast
29	chr15:92686000-92692400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:92686000-92703200	Weak transcription	Right Atrium	heart
31	chr15:92686200-92690600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:92686400-92692200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:92686400-92706800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:92686800-92707600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr15:92687400-92705000	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:92687600-92701000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr15:92687800-92691200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:92687800-92700400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:92688200-92692400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:92688400-92700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:92689000-92690600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr15:92689000-92690600	Enhancers	Fetal Brain Male	brain
44	chr15:92689200-92693400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:92689200-92697600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr15:92689200-92697600	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:92689200-92700200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr15:92689400-92690600	Flanking Active TSS	Brain Germinal Matrix	brain
49	chr15:92689400-92696200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:92689400-92697400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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