Variant report

Variant	rs74028858
Chromosome Location	chr15:92704752-92704753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF4	chr15:92704204-92704761	GM12878	blood:	n/a	n/a
2	MTA3	chr15:92704252-92704982	GM12878	blood:	n/a	n/a
3	SPI1	chr15:92704204-92704822	GM12878	blood:	n/a	chr15:92704366-92704379 chr15:92704682-92704695 chr15:92704367-92704380
4	BATF	chr15:92704258-92704843	GM12878	blood:	n/a	chr15:92704460-92704470
5	SPI1	chr15:92704154-92704818	GM12891	blood:	n/a	chr15:92704366-92704379 chr15:92704682-92704695 chr15:92704367-92704380
6	RELA	chr15:92704258-92704875	GM19193	blood:	n/a	n/a
7	EBF1	chr15:92704162-92704888	GM12878	blood:	n/a	chr15:92704417-92704428
8	JUND	chr15:92704152-92704864	GM12878	blood:	n/a	chr15:92704457-92704468 chr15:92704459-92704468 chr15:92704458-92704467
9	SMC3	chr15:92704342-92704769	GM12878	blood:	n/a	n/a
10	YY1	chr15:92704548-92704831	GM12892	blood:	n/a	chr15:92704707-92704717
11	BRCA1	chr15:92704711-92704809	H1-hESC	embryonic stem cell:	n/a	n/a
12	RUNX3	chr15:92704203-92704825	GM12878	blood:	n/a	n/a
13	ZNF143	chr15:92704270-92704773	GM12878	blood:	n/a	n/a
14	SPI1	chr15:92704112-92704798	GM12891	blood:	n/a	chr15:92704366-92704379 chr15:92704682-92704695 chr15:92704367-92704380
15	TBL1XR1	chr15:92704348-92704779	GM12878	blood:	n/a	n/a
16	IRF4	chr15:92704283-92704830	GM12878	blood:	n/a	n/a
17	YY1	chr15:92704370-92704806	GM12878	blood:	n/a	chr15:92704707-92704717
18	WRNIP1	chr15:92704155-92704815	GM12878	blood:	n/a	n/a
19	ATF2	chr15:92704177-92704764	GM12878	blood:	n/a	n/a
20	SPI1	chr15:92704024-92704928	GM12878	blood:	n/a	chr15:92704366-92704379 chr15:92704682-92704695 chr15:92704367-92704380
21	EP300	chr15:92704197-92704772	GM12878	blood:	n/a	chr15:92704368-92704377 chr15:92704658-92704672 chr15:92704459-92704468
22	ELK1	chr15:92704324-92704855	GM12878	blood:	n/a	chr15:92704736-92704745 chr15:92704736-92704745
23	YY1	chr15:92704409-92704790	GM12878	blood:	n/a	chr15:92704707-92704717

Variant related genes	Relation type
SLCO3A1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs74028848	1.00[AMR][1000 genomes]
rs74028852	1.00[AMR][1000 genomes]
rs74028853	1.00[AMR][1000 genomes]
rs74028855	1.00[AMR][1000 genomes]
rs74028856	1.00[AMR][1000 genomes]
rs74028857	1.00[AMR][1000 genomes]
rs74030513	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:92664000-92707000	Weak transcription	Liver	Liver
4	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
5	chr15:92671600-92708000	Weak transcription	Gastric	stomach
6	chr15:92671800-92707800	Weak transcription	Colonic Mucosa	Colon
7	chr15:92671800-92709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:92674800-92707800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:92686400-92706800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:92686800-92707600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:92687400-92705000	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:92689600-92706400	Weak transcription	HSMMtube	muscle
16	chr15:92690400-92707800	Weak transcription	Pancreas	Pancrea
17	chr15:92690600-92714600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:92690800-92706800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:92690800-92707000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:92692800-92712400	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:92692800-92715200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr15:92693200-92712600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:92693600-92707800	Weak transcription	Esophagus	oesophagus
24	chr15:92696000-92705800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:92696200-92706000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:92696200-92707800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:92696800-92705800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:92697400-92705800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:92697600-92706000	Weak transcription	Fetal Stomach	stomach
30	chr15:92698600-92706400	Weak transcription	Primary T cells from cord blood	blood
31	chr15:92699000-92711800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr15:92699800-92705200	Weak transcription	Right Ventricle	heart
33	chr15:92699800-92706000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:92700000-92705600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:92700000-92706000	Weak transcription	Ovary	ovary
36	chr15:92700400-92705000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr15:92700400-92705000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr15:92700400-92705600	Weak transcription	Adipose Nuclei	Adipose
39	chr15:92700600-92705800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:92700600-92712600	Weak transcription	Aorta	Aorta
41	chr15:92700800-92705000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr15:92701200-92704800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:92701200-92704800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr15:92701600-92704800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:92701600-92706400	Weak transcription	Fetal Thymus	thymus
46	chr15:92701800-92707400	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr15:92702000-92705600	Weak transcription	Lung	lung
48	chr15:92702000-92706800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:92702200-92710000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:92702400-92706000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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