Variant report

Variant	rs74029725
Chromosome Location	chr16:69905567-69905568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10400955	1.00[EUR][1000 genomes]
rs11510266	1.00[EUR][1000 genomes]
rs11860910	1.00[EUR][1000 genomes]
rs13333561	1.00[EUR][1000 genomes]
rs13335267	1.00[EUR][1000 genomes]
rs13335499	1.00[EUR][1000 genomes]
rs13338793	1.00[EUR][1000 genomes]
rs28522432	1.00[EUR][1000 genomes]
rs28538568	1.00[EUR][1000 genomes]
rs28611042	1.00[EUR][1000 genomes]
rs28753861	1.00[EUR][1000 genomes]
rs28788800	1.00[EUR][1000 genomes]
rs45568735	1.00[EUR][1000 genomes]
rs45608334	1.00[EUR][1000 genomes]
rs56182388	1.00[EUR][1000 genomes]
rs57154889	1.00[EUR][1000 genomes]
rs58892726	1.00[EUR][1000 genomes]
rs60137705	1.00[EUR][1000 genomes]
rs60683406	1.00[EUR][1000 genomes]
rs60949042	1.00[EUR][1000 genomes]
rs61731358	1.00[EUR][1000 genomes]
rs7184392	1.00[EUR][1000 genomes]
rs7185321	1.00[EUR][1000 genomes]
rs7185659	1.00[EUR][1000 genomes]
rs7186422	1.00[EUR][1000 genomes]
rs7188693	1.00[EUR][1000 genomes]
rs7189022	1.00[EUR][1000 genomes]
rs7189521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7190665	1.00[EUR][1000 genomes]
rs7191138	1.00[EUR][1000 genomes]
rs7193149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7197774	1.00[EUR][1000 genomes]
rs7199881	1.00[EUR][1000 genomes]
rs7200168	1.00[EUR][1000 genomes]
rs7200242	1.00[EUR][1000 genomes]
rs74029722	1.00[EUR][1000 genomes]
rs74029732	1.00[EUR][1000 genomes]
rs74029733	1.00[EUR][1000 genomes]
rs74029738	1.00[EUR][1000 genomes]
rs74029748	1.00[EUR][1000 genomes]
rs8052959	1.00[EUR][1000 genomes]
rs9921205	1.00[EUR][1000 genomes]
rs9925155	1.00[EUR][1000 genomes]
rs9929073	1.00[EUR][1000 genomes]
rs9934685	1.00[EUR][1000 genomes]
rs9934743	1.00[EUR][1000 genomes]
rs9934983	1.00[EUR][1000 genomes]
rs9935008	1.00[EUR][1000 genomes]
rs9939065	1.00[EUR][1000 genomes]
rs9940805	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1062171	chr16:69854267-70188585	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv542941	chr16:69854267-70188585	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1059249	chr16:69854467-70188446	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	nsv542942	chr16:69854467-70188446	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
6	esv2758428	chr16:69855122-70313222	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	esv2758652	chr16:69855122-70313222	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
8	nsv960355	chr16:69901844-69907446	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69834000-69910600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr16:69837000-69905600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr16:69874000-69905800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr16:69876000-69905800	Weak transcription	Dnd41	blood
5	chr16:69876200-69905800	Weak transcription	Brain Germinal Matrix	brain
6	chr16:69888000-69905600	Weak transcription	Gastric	stomach
7	chr16:69889600-69905600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:69890400-69923400	Weak transcription	HUVEC	blood vessel
9	chr16:69893000-69906800	Weak transcription	GM12878-XiMat	blood
10	chr16:69893000-69907000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr16:69893000-69934800	Weak transcription	Hela-S3	cervix
12	chr16:69893200-69906400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr16:69893200-69923000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr16:69893400-69906400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr16:69893600-69905600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:69893600-69910600	Weak transcription	A549	lung
17	chr16:69895200-69905600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr16:69895400-69905600	Weak transcription	Aorta	Aorta
19	chr16:69895600-69906200	Weak transcription	Fetal Brain Female	brain
20	chr16:69895800-69907000	Weak transcription	Small Intestine	intestine
21	chr16:69896000-69905600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr16:69896000-69905800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr16:69896000-69906200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr16:69896000-69906400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr16:69896000-69906400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr16:69896000-69909400	Weak transcription	Fetal Kidney	kidney
27	chr16:69896200-69905600	Weak transcription	Brain Anterior Caudate	brain
28	chr16:69896400-69905800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr16:69896400-69906600	Weak transcription	Stomach Mucosa	stomach
30	chr16:69896400-69910000	Weak transcription	Fetal Lung	lung
31	chr16:69896600-69905600	Weak transcription	Adipose Nuclei	Adipose
32	chr16:69896600-69905600	Weak transcription	Lung	lung
33	chr16:69896600-69905600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr16:69896600-69905600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr16:69896600-69905600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr16:69896600-69906600	Weak transcription	Colon Smooth Muscle	Colon
37	chr16:69896600-69909200	Strong transcription	Fetal Intestine Small	intestine
38	chr16:69896600-69910200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr16:69896800-69907200	Weak transcription	Right Atrium	heart
40	chr16:69897000-69905600	Weak transcription	Colonic Mucosa	Colon
41	chr16:69897000-69905600	Weak transcription	Ovary	ovary
42	chr16:69897000-69905600	Weak transcription	Right Ventricle	heart
43	chr16:69897000-69906400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr16:69898600-69905800	Weak transcription	Pancreas	Pancrea
45	chr16:69900000-69905600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr16:69900000-69905800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr16:69900000-69905800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr16:69900000-69906400	Weak transcription	NHDF-Ad	bronchial
49	chr16:69900000-69914600	Weak transcription	NHLF	lung
50	chr16:69900200-69910000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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