Variant report

Variant	rs74029753
Chromosome Location	chr15:78284952-78284953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78273690..78276201-chr15:78283311..78284998,2	K562	blood:
2	chr15:78275921..78279838-chr15:78281220..78285014,4	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12101617	1.00[AMR][1000 genomes]
rs28414041	1.00[AMR][1000 genomes]
rs28414393	1.00[AMR][1000 genomes]
rs28456684	1.00[AMR][1000 genomes]
rs28555436	1.00[AMR][1000 genomes]
rs28628734	1.00[AMR][1000 genomes]
rs28630441	1.00[AMR][1000 genomes]
rs28658476	1.00[AMR][1000 genomes]
rs28683668	1.00[AMR][1000 genomes]
rs28702796	1.00[AMR][1000 genomes]
rs58863937	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78276000-78285200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:78277600-78285600	Enhancers	Placenta	Placenta
3	chr15:78278400-78288800	Enhancers	Fetal Muscle Leg	muscle
4	chr15:78279400-78287600	Enhancers	Fetal Heart	heart
5	chr15:78279400-78287800	Enhancers	Adipose Nuclei	Adipose
6	chr15:78279400-78289800	Enhancers	Ovary	ovary
7	chr15:78279800-78289600	Weak transcription	Fetal Brain Female	brain
8	chr15:78280000-78285400	Enhancers	Fetal Thymus	thymus
9	chr15:78280000-78290400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:78280200-78295800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:78280800-78285800	Enhancers	Lung	lung
12	chr15:78280800-78286400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:78280800-78287600	Enhancers	Right Ventricle	heart
14	chr15:78281000-78285000	Enhancers	Fetal Lung	lung
15	chr15:78281000-78289600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:78281200-78285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr15:78281200-78287000	Enhancers	Pancreas	Pancrea
18	chr15:78281400-78285000	Enhancers	Duodenum Mucosa	Duodenum
19	chr15:78281800-78287600	Enhancers	Right Atrium	heart
20	chr15:78282000-78286000	Enhancers	HSMMtube	muscle
21	chr15:78282000-78287800	Enhancers	Rectal Smooth Muscle	rectum
22	chr15:78282200-78285000	Enhancers	HepG2	liver
23	chr15:78282200-78285200	Enhancers	Brain Hippocampus Middle	brain
24	chr15:78282200-78285800	Enhancers	Gastric	stomach
25	chr15:78282200-78287000	Enhancers	Primary B cells from peripheral blood	blood
26	chr15:78282200-78287600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:78282200-78287800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr15:78282200-78289600	Enhancers	NHLF	lung
29	chr15:78282400-78285000	Enhancers	Fetal Intestine Large	intestine
30	chr15:78282400-78285200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:78282400-78285800	Enhancers	Colonic Mucosa	Colon
32	chr15:78282400-78285800	Enhancers	Fetal Muscle Trunk	muscle
33	chr15:78282400-78286000	Enhancers	Hela-S3	cervix
34	chr15:78282400-78286200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr15:78282400-78287000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:78282400-78288800	Enhancers	HMEC	breast
37	chr15:78282600-78285000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:78282600-78285000	Enhancers	Brain Angular Gyrus	brain
39	chr15:78282600-78285200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:78282600-78285800	Enhancers	Liver	Liver
41	chr15:78282600-78286000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:78282600-78286200	Enhancers	NH-A	brain
43	chr15:78282600-78286600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:78282600-78287000	Enhancers	Left Ventricle	heart
45	chr15:78282600-78287000	Enhancers	Psoas Muscle	Psoas
46	chr15:78282600-78287800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:78282600-78287800	Enhancers	Brain Substantia Nigra	brain
48	chr15:78282600-78287800	Enhancers	Colon Smooth Muscle	Colon
49	chr15:78282600-78287800	Enhancers	Stomach Mucosa	stomach
50	chr15:78282600-78288000	Enhancers	HUVEC	blood vessel

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