Variant report

Variant	rs74031209
Chromosome Location	chr16:81621990-81621991
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81619830..81622273-chr16:81749379..81751605,2	MCF-7	breast:
2	chr16:81621040..81624026-chr16:81625221..81627874,3	MCF-7	breast:
3	chr16:81621915..81623701-chr16:81627145..81629070,2	MCF-7	breast:
4	chr16:81602073..81603967-chr16:81621534..81623080,2	K562	blood:
5	chr16:81512810..81515349-chr16:81620937..81623015,2	K562	blood:
6	chr16:81621518..81623416-chr16:81629729..81631596,2	MCF-7	breast:
7	chr16:81614429..81616933-chr16:81620116..81623654,4	MCF-7	breast:
8	chr16:81612072..81615265-chr16:81618442..81622019,3	K562	blood:

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73596456	1.00[AMR][1000 genomes]
rs74031216	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1898	chr16:81581637-81626505	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81585600-81628600	Weak transcription	GM12878-XiMat	blood
2	chr16:81588200-81640800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr16:81593200-81622400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr16:81593200-81641200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr16:81599000-81633000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr16:81608000-81623400	Weak transcription	Fetal Brain Male	brain
7	chr16:81615800-81623800	Strong transcription	Primary B cells from cord blood	blood
8	chr16:81615800-81624800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr16:81616800-81623400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr16:81616800-81640800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr16:81617000-81622200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr16:81617000-81623200	Weak transcription	Brain Germinal Matrix	brain
13	chr16:81617000-81623200	Weak transcription	Right Ventricle	heart
14	chr16:81617000-81634400	Weak transcription	Ovary	ovary
15	chr16:81617400-81622000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr16:81617400-81623600	Weak transcription	Right Atrium	heart
17	chr16:81617400-81626000	Weak transcription	Spleen	Spleen
18	chr16:81617400-81634000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:81617400-81634000	Weak transcription	Fetal Lung	lung
20	chr16:81617400-81648800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr16:81617600-81633400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr16:81617600-81634000	Weak transcription	HUVEC	blood vessel
23	chr16:81617800-81622200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr16:81617800-81623800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr16:81617800-81625000	Weak transcription	Left Ventricle	heart
26	chr16:81617800-81626200	Weak transcription	Brain Angular Gyrus	brain
27	chr16:81618000-81625000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr16:81618000-81625000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr16:81618000-81625200	Weak transcription	Colonic Mucosa	Colon
30	chr16:81618000-81627000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr16:81618000-81630200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr16:81618200-81634000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr16:81618400-81626800	Genic enhancers	A549	lung
34	chr16:81618400-81633000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr16:81618400-81633000	Weak transcription	NHDF-Ad	bronchial
36	chr16:81618600-81622000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr16:81618600-81622000	Weak transcription	Dnd41	blood
38	chr16:81618600-81623400	Weak transcription	Adipose Nuclei	Adipose
39	chr16:81618600-81623400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr16:81618600-81624800	Weak transcription	Fetal Thymus	thymus
41	chr16:81618600-81625200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr16:81618600-81626000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr16:81618600-81626800	Weak transcription	Fetal Muscle Leg	muscle
44	chr16:81618800-81623600	Weak transcription	Esophagus	oesophagus
45	chr16:81618800-81625000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr16:81619200-81622200	Enhancers	Placenta	Placenta
47	chr16:81619200-81630200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr16:81619400-81624800	Weak transcription	Small Intestine	intestine
49	chr16:81619600-81623400	Weak transcription	Lung	lung
50	chr16:81619600-81623800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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