Variant report

Variant	rs74037436
Chromosome Location	chr14:25475997-25475998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:25434060..25436749-chr14:25474798..25476702,2	K562	blood:
2	chr14:25475307..25477626-chr14:25483489..25485932,2	MCF-7	breast:
3	chr14:25474104..25476985-chr14:25480254..25482757,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17109444	1.00[AMR][1000 genomes]
rs55992748	1.00[AMR][1000 genomes]
rs55995630	1.00[AMR][1000 genomes]
rs56393711	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58932553	1.00[AMR][1000 genomes]
rs59675442	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74037427	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25463200-25476600	Weak transcription	Placenta	Placenta
2	chr14:25468000-25476000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:25471200-25476200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:25472200-25476200	Enhancers	HSMM	muscle
5	chr14:25473000-25476400	Weak transcription	Brain Anterior Caudate	brain
6	chr14:25473000-25477800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:25473200-25476200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:25473400-25476600	Weak transcription	Adipose Nuclei	Adipose
9	chr14:25473400-25476600	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:25473400-25477200	Enhancers	Fetal Intestine Small	intestine
11	chr14:25473400-25477800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:25473400-25478600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:25473400-25478800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:25473400-25479200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:25473600-25476200	Weak transcription	Brain Angular Gyrus	brain
16	chr14:25473600-25476200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:25473600-25476200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:25473600-25476400	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:25473600-25478600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:25473800-25478000	Weak transcription	Fetal Brain Male	brain
21	chr14:25473800-25478200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:25474200-25476200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr14:25474200-25476600	Weak transcription	Pancreas	Pancrea
24	chr14:25474200-25476600	Weak transcription	Right Atrium	heart
25	chr14:25474200-25476600	Weak transcription	Right Ventricle	heart
26	chr14:25474200-25476800	Weak transcription	Brain Substantia Nigra	brain
27	chr14:25474200-25477800	Enhancers	HepG2	liver
28	chr14:25474800-25476000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:25474800-25476200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:25474800-25477400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:25475200-25476000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:25475200-25476200	Enhancers	HSMMtube	muscle
33	chr14:25475200-25477200	Enhancers	Fetal Intestine Large	intestine
34	chr14:25475200-25478000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:25475200-25480800	Enhancers	Placenta Amnion	Placenta Amnion
36	chr14:25475400-25477400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr14:25475400-25478800	Enhancers	Fetal Heart	heart
38	chr14:25475600-25476200	Enhancers	NH-A	brain
39	chr14:25475600-25476600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr14:25475600-25476600	Weak transcription	Left Ventricle	heart
41	chr14:25475600-25477400	Enhancers	Stomach Mucosa	stomach
42	chr14:25475600-25478800	Weak transcription	Lung	lung
43	chr14:25475600-25479400	Enhancers	Fetal Lung	lung
44	chr14:25475800-25476400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr14:25475800-25476400	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr14:25475800-25477000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr14:25475800-25477000	Enhancers	NHLF	lung
48	chr14:25475800-25477200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr14:25475800-25477200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr14:25475800-25477200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links