Variant report

Variant	rs74044297
Chromosome Location	chr14:36893105-36893106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55806223	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57147088	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60340476	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74044296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044298	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74044313	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv832771	chr14:36771007-36964041	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36889200-36893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:36890000-36899400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:36892000-36893600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr14:36892000-36894600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr14:36892200-36894400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:36892200-36894400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr14:36892200-36895200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr14:36892400-36894400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr14:36892600-36893200	Enhancers	Psoas Muscle	Psoas
10	chr14:36892600-36893800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:36892600-36894200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr14:36892800-36893400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:36892800-36893800	Enhancers	Brain Germinal Matrix	brain
14	chr14:36892800-36893800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr14:36893000-36893200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:36893000-36893800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr14:36893000-36898800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr14:36893000-36899000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:36893000-36899400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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