Variant report

Variant	rs74045158
Chromosome Location	chr14:42067237-42067238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57196741	1.00[AMR][1000 genomes]
rs57308160	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58657465	1.00[AMR][1000 genomes]
rs59736888	1.00[AMR][1000 genomes]
rs74045114	1.00[AMR][1000 genomes]
rs74045115	1.00[AMR][1000 genomes]
rs74045118	1.00[AMR][1000 genomes]
rs74045120	1.00[AMR][1000 genomes]
rs74045122	1.00[AMR][1000 genomes]
rs74045123	1.00[AMR][1000 genomes]
rs74045157	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045160	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1831164	chr14:41673017-42103168	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv533968	chr14:41882101-42327882	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1042078	chr14:41993985-42120143	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758353	chr14:42045873-42259511	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2759983	chr14:42045873-42259511	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42056800-42069200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:42065600-42068400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr14:42065800-42067800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:42066200-42067600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr14:42066800-42067400	Active TSS	Placenta	Placenta
6	chr14:42067000-42067800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:42067000-42068200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr14:42067000-42074000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:42067200-42067400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:42067200-42073400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:42067200-42073800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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