Variant report

Variant	rs74045429
Chromosome Location	chr13:37772371-37772372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55788816	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56060881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57446943	0.91[AFR][1000 genomes]
rs74045455	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045460	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045461	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37768600-37775400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:37768600-37775400	Weak transcription	NHLF	lung
3	chr13:37769000-37772600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:37769200-37772400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:37769400-37772800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:37769400-37775600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:37769600-37775400	Weak transcription	NHDF-Ad	bronchial
8	chr13:37769800-37773000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:37770000-37772800	Weak transcription	NH-A	brain
10	chr13:37770800-37772800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:37771200-37774200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr13:37771800-37772400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr13:37771800-37772600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:37771800-37773000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr13:37771800-37773200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr13:37772000-37772400	Flanking Active TSS	Osteobl	bone
17	chr13:37772000-37772600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr13:37772000-37772600	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr13:37772000-37772800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr13:37772000-37772800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:37772000-37773200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr13:37772000-37774000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr13:37772200-37772600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr13:37772200-37773000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr13:37772200-37773200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr13:37772200-37773600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr13:37772200-37774200	Enhancers	HUES64 Cell Line	embryonic stem cell

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