Variant report

Variant	rs74045757
Chromosome Location	chr14:42516964-42516965
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55979981	0.96[AFR][1000 genomes]
rs57469155	0.84[AFR][1000 genomes]
rs74045713	0.84[AFR][1000 genomes]
rs74045729	0.93[AFR][1000 genomes]
rs74045730	0.93[AFR][1000 genomes]
rs74045731	0.92[AFR][1000 genomes]
rs74045732	1.00[AFR][1000 genomes]
rs74045733	1.00[AFR][1000 genomes]
rs74048816	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564563	chr14:42477256-42644617	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv526260	chr14:42498031-42672410	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv832779	chr14:42507510-42688901	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42516200-42517000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr14:42516600-42517400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr14:42516600-42517400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:42516800-42517600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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