Variant report

Variant	rs74051652
Chromosome Location	chr1:9447715-9447716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:9443056..9445131-chr1:9447394..9449861,2	K562	blood:
2	chr1:9439226..9441134-chr1:9446219..9450095,3	K562	blood:
3	chr1:9447319..9449114-chr1:9451279..9452883,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11121428	1.00[EUR][1000 genomes]
rs11811820	1.00[EUR][1000 genomes]
rs55913306	1.00[EUR][1000 genomes]
rs56133240	1.00[EUR][1000 genomes]
rs57585081	1.00[EUR][1000 genomes]
rs60678622	1.00[EUR][1000 genomes]
rs61547143	1.00[EUR][1000 genomes]
rs6701659	1.00[EUR][1000 genomes]
rs72862732	1.00[EUR][1000 genomes]
rs72862734	1.00[EUR][1000 genomes]
rs7354926	1.00[EUR][1000 genomes]
rs74051531	1.00[EUR][1000 genomes]
rs74051533	1.00[EUR][1000 genomes]
rs74051540	1.00[EUR][1000 genomes]
rs74051544	1.00[EUR][1000 genomes]
rs74051646	1.00[EUR][1000 genomes]
rs74051648	1.00[EUR][1000 genomes]
rs74051651	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9662928	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931984	chr1:8879337-9694749	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	570 gene(s)	inside rSNPs	diseases
2	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
3	esv3345013	chr1:9237327-9475707	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv871098	chr1:9371099-9469114	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003190	chr1:9382452-9554553	Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv534850	chr1:9382452-9554553	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1013224	chr1:9441040-9699768	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:9442000-9449400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:9442200-9450200	Enhancers	Brain Cingulate Gyrus	brain
3	chr1:9442800-9448800	Enhancers	Brain Hippocampus Middle	brain
4	chr1:9443000-9448800	Enhancers	Brain Substantia Nigra	brain
5	chr1:9443200-9449200	Enhancers	Brain Anterior Caudate	brain
6	chr1:9443600-9449000	Weak transcription	Spleen	Spleen
7	chr1:9444000-9450000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr1:9445000-9448200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:9445200-9448200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:9445200-9448400	Weak transcription	Right Atrium	heart
11	chr1:9445200-9448400	Weak transcription	NH-A	brain
12	chr1:9445200-9448600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:9445400-9448200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:9445400-9448400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:9445400-9448400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr1:9445400-9448600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:9445400-9448600	Weak transcription	HUVEC	blood vessel
18	chr1:9446000-9448200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr1:9446000-9448200	Weak transcription	HSMM	muscle
20	chr1:9446000-9448400	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:9446000-9448400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr1:9446000-9448600	Weak transcription	Psoas Muscle	Psoas
23	chr1:9446000-9448800	Weak transcription	Fetal Intestine Large	intestine
24	chr1:9446200-9447800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:9446200-9448400	Weak transcription	Ovary	ovary
26	chr1:9446200-9448400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:9446200-9448400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr1:9446400-9448600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:9446400-9448600	Weak transcription	Left Ventricle	heart
30	chr1:9446600-9448400	Weak transcription	Colonic Mucosa	Colon
31	chr1:9446600-9448400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr1:9446600-9448600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr1:9446600-9448600	Weak transcription	Right Ventricle	heart
34	chr1:9446600-9448800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr1:9446800-9448200	Weak transcription	Hela-S3	cervix
36	chr1:9446800-9448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:9446800-9448600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr1:9447200-9447800	Enhancers	Aorta	Aorta
39	chr1:9447200-9449000	Enhancers	Brain Angular Gyrus	brain
40	chr1:9447200-9449200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr1:9447400-9448000	Weak transcription	A549	lung
42	chr1:9447600-9447800	Enhancers	HSMMtube	muscle
43	chr1:9447600-9448000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr1:9447600-9448400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr1:9447600-9448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr1:9447600-9449400	Enhancers	Adipose Nuclei	Adipose
47	chr1:9447600-9449400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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