Variant report
| Variant | rs74052625 |
|---|---|
| Chromosome Location | chr11:4949860-4949861 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr11:4949712-4949913 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:4944719..4946269-chr11:4949741..4951942,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR51G1 | TF binding region |
| ENSG00000176879 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs60765399 | 1.00[AFR][1000 genomes] |
| rs74052622 | 1.00[AFR][1000 genomes] |
| rs74052649 | 1.00[AFR][1000 genomes] |
| rs74052695 | 1.00[AFR][1000 genomes] |
| rs74052698 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054847 | chr11:4642875-5200656 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv2758254 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 3 | esv2759799 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 4 | nsv7652 | chr11:4946245-4997769 | Enhancers Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 19 gene(s) | inside rSNPs | diseases |
| 5 | nsv1052130 | chr11:4948148-4974017 | Flanking Active TSS Enhancers | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv1049277 | chr11:4948160-4974017 | Enhancers Flanking Active TSS | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 7 | nsv1036758 | chr11:4948560-4974017 | Enhancers Flanking Active TSS | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
