Variant report

Variant	rs74053260
Chromosome Location	chr11:5991206-5991207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:5991173-5991223	HUVEC	blood vessel:	n/a
2	chr11:5991173-5991223	SKMC	muscle:	n/a
3	chr11:5991173-5991223	AG09319	gingival:	n/a
4	chr11:5991173-5991223	HPAEpiC	pulmonary alveolar:	n/a
5	chr11:5991173-5991223	Hepatocyte	liver:	n/a
6	chr11:5991173-5991223	GM19239	blood:	n/a
7	chr11:5991173-5991223	ProgFib	skin:	n/a
8	chr11:5991173-5991223	HRE	kidney:	n/a
9	chr11:5991173-5991223	SK-N-SH	brain:	n/a
10	chr11:5991173-5991223	A549	lung:	n/a
11	chr11:5991173-5991223	HRCEpiC	kidney:	n/a
12	chr11:5991173-5991223	HCM	heart:	n/a
13	chr11:5991173-5991223	H1-hESC	embryonic stem cell:	embryo
14	chr11:5991173-5991223	AG04450	lung:	fetal
15	chr11:5991173-5991223	HMEC	breast:	n/a
16	chr11:5991173-5991223	Hela-S3	cervix:	n/a
17	chr11:5991173-5991223	AG10803	skin:	n/a
18	chr11:5991173-5991223	Caco-2	colon:	n/a
19	chr11:5991173-5991223	LNCaP	prostate:	n/a
20	chr11:5991173-5991223	K562	blood:	n/a
21	chr11:5991173-5991223	HEK293	kidney:	embryo
22	chr11:5991173-5991223	BJ	skin:	n/a
23	chr11:5991173-5991223	HepG2	liver:	n/a
24	chr11:5991173-5991223	CMK	blood:	n/a
25	chr11:5991173-5991223	RPTEC	kidney:	n/a
26	chr11:5991173-5991223	NT2-D1	testis:	n/a
27	chr11:5991173-5991223	HCPEpiC	choroid plexus:	n/a
28	chr11:5991173-5991223	HL-60	blood:	n/a
29	chr11:5991173-5991223	MCF-7	breast:	n/a
30	chr11:5991173-5991223	HIPEpiC	eye:	n/a
31	chr11:5991173-5991223	PFSK-1	brain:	n/a
32	chr11:5991173-5991223	NH-A	brain:	n/a
33	chr11:5991173-5991223	SK-N-MC	brain:	n/a
34	chr11:5991173-5991223	HRPEpiC	eye:	n/a
35	chr11:5991173-5991223	HNPCEpiC	eye:	n/a
36	chr11:5991173-5991223	NHDF-neo	bronchial:	n/a
37	chr11:5991173-5991223	AoSMC	blood vessel:	n/a
38	chr11:5991173-5991223	GM12892	blood:	n/a
39	chr11:5991173-5991223	HEEpiC	esophagus:	n/a
40	chr11:5991173-5991223	GM06990	blood:	n/a
41	chr11:5991173-5991223	NHBE	bronchial:	n/a
42	chr11:5991173-5991223	BE2_C	brain:	n/a
43	chr11:5991173-5991223	GM12891	blood:	n/a
44	chr11:5991173-5991223	HCF	heart:	n/a
45	chr11:5991173-5991223	ECC-1	luminal epithelium:	n/a
46	chr11:5991173-5991223	Jurkat	blood:	n/a
47	chr11:5991173-5991223	AG09309	skin:	n/a
48	chr11:5991173-5991223	SAEC	small airway:	n/a
49	chr11:5991173-5991223	PrEC	prostate:	n/a
50	chr11:5991173-5991223	HAEpiC	amniotic membrane:	n/a

No data

Variant related genes	Relation type
ENSG00000188691	CpG island

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74053262	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv1053414	chr11:5612989-6030212	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
6	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv553277	chr11:5722948-6010075	Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	esv2759801	chr11:5730377-6007613	ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	esv2757422	chr11:5868055-6007613	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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