The 2.0 version of rSNPBase

Variant report

Variant rs7405338
Chromosome Location chr16:12189354-12189355
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:12178600-12199600 Weak transcription Aorta Aorta
2 chr16:12184000-12189400 Weak transcription Placenta Amnion Placenta Amnion
3 chr16:12184000-12191600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr16:12184200-12190400 Enhancers Thymus Thymus
5 chr16:12184200-12192200 Weak transcription Gastric stomach
6 chr16:12184200-12193000 Enhancers Fetal Thymus thymus
7 chr16:12184400-12231200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr16:12186000-12189800 Weak transcription Esophagus oesophagus
9 chr16:12186400-12189400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr16:12186600-12189400 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr16:12186600-12189400 Weak transcription Fetal Kidney kidney
12 chr16:12186600-12189800 Weak transcription Small Intestine intestine
13 chr16:12186600-12190800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr16:12186600-12190800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr16:12186800-12189400 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr16:12186800-12189400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr16:12186800-12190600 Weak transcription Colonic Mucosa Colon
18 chr16:12186800-12213400 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr16:12187000-12189800 Weak transcription Lung lung
20 chr16:12187000-12190000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr16:12187000-12192200 Weak transcription Primary monocytes fromperipheralblood blood
22 chr16:12187200-12189400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr16:12187400-12191000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr16:12188000-12194400 Strong transcription GM12878-XiMat blood
25 chr16:12188200-12190600 Weak transcription Monocytes-CD14+_RO01746 blood
26 chr16:12188200-12192000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr16:12188400-12190600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
28 chr16:12188400-12193600 Enhancers Placenta Placenta
29 chr16:12188800-12189400 Enhancers K562 blood
30 chr16:12188800-12189800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr16:12188800-12190000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
32 chr16:12188800-12190000 Enhancers Primary T cells fromperipheralblood blood
33 chr16:12188800-12190800 Enhancers Fetal Muscle Trunk muscle
34 chr16:12188800-12192400 Enhancers Fetal Stomach stomach
35 chr16:12188800-12192400 Enhancers Rectal Mucosa Donor 31 rectum
36 chr16:12189000-12189600 Bivalent Enhancer ES-I3 Cell Line embryonic stem cell
37 chr16:12189000-12189600 Enhancers H1 Cell Line embryonic stem cell
38 chr16:12189000-12189600 Enhancers HUES48 Cell Line embryonic stem cell
39 chr16:12189000-12189600 Enhancers iPS-20b Cell Line embryonic stem cell
40 chr16:12189000-12189600 Enhancers Primary Natural Killer cells fromperipheralblood blood
41 chr16:12189000-12189800 Enhancers HUES64 Cell Line embryonic stem cell
42 chr16:12189000-12190200 Weak transcription Primary B cells from cord blood blood
43 chr16:12189000-12190400 Enhancers ES-WA7 Cell Line embryonic stem cell
44 chr16:12189000-12192000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
45 chr16:12189000-12192000 Enhancers Cortex derived primary cultured neurospheres brain
46 chr16:12189000-12192000 Enhancers Fetal Adrenal Gland Adrenal Gland
47 chr16:12189200-12189400 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
48 chr16:12189200-12189400 Active TSS Brain Inferior Temporal Lobe brain
49 chr16:12189200-12189400 Active TSS Colon Smooth Muscle Colon
50 chr16:12189200-12189400 Enhancers Duodenum Smooth Muscle Duodenum

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015