Variant report

Variant	rs74056879
Chromosome Location	chr14:66299981-66299982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66294398..66297294-chr14:66299111..66300788,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11623349	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623689	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11623927	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11627737	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12896055	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs55768814	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59153534	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs74056874	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74056877	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74056882	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1052389	chr14:66255781-66321562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1038849	chr14:66259700-66329919	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv564953	chr14:66287921-67046960	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66288800-66300800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:66298600-66304800	Weak transcription	Thymus	Thymus
3	chr14:66299000-66300400	Enhancers	Primary T cells from cord blood	blood
4	chr14:66299200-66300000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:66299200-66300200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:66299200-66300200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr14:66299200-66300200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:66299200-66300400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:66299200-66300400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr14:66299200-66300600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr14:66299200-66300600	Enhancers	Dnd41	blood
12	chr14:66299200-66300800	Enhancers	Adipose Nuclei	Adipose
13	chr14:66299200-66301000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr14:66299200-66303000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:66299400-66300200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:66299400-66300200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr14:66299400-66300400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr14:66299400-66300600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr14:66299400-66302400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr14:66299600-66300000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:66299600-66300000	Enhancers	Brain Hippocampus Middle	brain
22	chr14:66299600-66300000	Enhancers	Fetal Thymus	thymus
23	chr14:66299600-66300200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:66299600-66300200	Enhancers	Small Intestine	intestine
25	chr14:66299600-66300400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr14:66299600-66300600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:66299600-66301000	Enhancers	Brain Germinal Matrix	brain
28	chr14:66299800-66300000	Enhancers	Fetal Lung	lung
29	chr14:66299800-66300000	Flanking Active TSS	NHDF-Ad	bronchial
30	chr14:66299800-66300200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:66299800-66300200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr14:66299800-66300200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr14:66299800-66300200	Enhancers	Brain Angular Gyrus	brain
34	chr14:66299800-66300200	Enhancers	Spleen	Spleen
35	chr14:66299800-66300400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr14:66299800-66300400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr14:66299800-66300400	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr14:66299800-66300400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:66299800-66300400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr14:66299800-66300400	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr14:66299800-66300600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr14:66299800-66300600	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr14:66299800-66300600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr14:66299800-66301000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr14:66299800-66301400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr14:66299800-66302200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr14:66299800-66302200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr14:66299800-66302400	Enhancers	H1 Cell Line	embryonic stem cell
49	chr14:66299800-66303200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr14:66299800-66303400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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