Variant report

Variant	rs74057059
Chromosome Location	chr14:63063065-63063066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1602175	0.96[AFR][1000 genomes]
rs1826112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4124314	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55671186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55683677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57485031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58701850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74057060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74058605	1.00[AMR][1000 genomes]
rs74058606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74058607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8017142	0.91[AFR][1000 genomes]
rs8020820	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043508	chr14:62750671-63150403	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1037232	chr14:62758045-63116423	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv949518	chr14:62777098-63123208	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1046202	chr14:63008642-63098728	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv523444	chr14:63009071-63100169	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1805613	chr14:63059598-63067015	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3530130	chr14:63061147-63065946	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv3530131	chr14:63061198-63065896	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	esv3530132	chr14:63061198-63065896	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv17476	chr14:63061408-63065739	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv1807938	chr14:63061430-63064827	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv1804754	chr14:63061430-63065683	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	esv1809505	chr14:63061430-63065683	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	esv1810680	chr14:63061430-63065683	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv1811675	chr14:63061430-63065683	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	esv1814767	chr14:63061430-63065683	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	esv1814886	chr14:63061430-63065683	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv1806373	chr14:63061430-63067015	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	esv1809890	chr14:63061430-63072442	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1812280	chr14:63061430-63072442	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv1813049	chr14:63061430-63072442	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv1806424	chr14:63061430-63083950	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv517094	chr14:63061920-63063997	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63060200-63063400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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