Variant report

Variant	rs74058421
Chromosome Location	chr14:67905145-67905146
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:67898493..67900065-chr14:67902969..67905934,2	MCF-7	breast:
2	chr14:67902911..67909562-chr14:67998675..68002742,8	MCF-7	breast:
3	chr14:67903388..67905312-chr14:67950420..67951946,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198133	Chromatin interaction
ENSG00000054690	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56367500	1.00[AMR][1000 genomes]
rs73272328	1.00[AMR][1000 genomes]
rs74058404	1.00[AMR][1000 genomes]
rs74058409	1.00[AMR][1000 genomes]
rs74058416	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1054389	chr14:67804987-67922598	Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv542121	chr14:67804987-67922598	Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv1319	chr14:67863561-67908725	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	12 gene(s)	inside rSNPs	diseases
8	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67892800-67909000	Weak transcription	Right Atrium	heart
2	chr14:67895800-67907000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:67896200-67905800	Weak transcription	Fetal Intestine Large	intestine
4	chr14:67898600-67919800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:67899200-67909200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:67899600-67907400	Weak transcription	Left Ventricle	heart
7	chr14:67902400-67905200	Enhancers	Brain Substantia Nigra	brain
8	chr14:67902400-67905200	Enhancers	Duodenum Mucosa	Duodenum
9	chr14:67903200-67912600	Weak transcription	Psoas Muscle	Psoas
10	chr14:67903400-67906400	Weak transcription	HepG2	liver
11	chr14:67903600-67906600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:67903600-67906600	Weak transcription	Stomach Mucosa	stomach
13	chr14:67903600-67907800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:67903600-67908000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:67903800-67905200	Enhancers	Brain Anterior Caudate	brain
16	chr14:67904000-67909800	Enhancers	Pancreas	Pancrea
17	chr14:67904200-67908000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr14:67904600-67905200	Enhancers	Brain Hippocampus Middle	brain
19	chr14:67905000-67905200	Enhancers	Placenta	Placenta
20	chr14:67905000-67909200	Weak transcription	Adipose Nuclei	Adipose

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