Variant report

Variant	rs74059924
Chromosome Location	chr14:69730344-69730345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr14:69730135-69730396	MCF10A-Er-Src	breast:	n/a	n/a
2	FOSL2	chr14:69729917-69730391	SK-N-SH	brain:	n/a	n/a
3	PBX3	chr14:69729940-69730631	SK-N-SH	brain:	n/a	n/a
4	RCOR1	chr14:69729727-69730943	IMR90	lung:	n/a	n/a
5	CEBPB	chr14:69730101-69730539	IMR90	lung:	n/a	n/a
6	FOS	chr14:69730095-69730350	MCF10A-Er-Src	breast:	n/a	n/a
7	MAFK	chr14:69730112-69730432	IMR90	lung:	n/a	n/a
8	MXI1	chr14:69729852-69731298	IMR90	lung:	n/a	chr14:69730408-69730423
9	STAT3	chr14:69730137-69730436	MCF10A-Er-Src	breast:	n/a	chr14:69730285-69730297
10	EP300	chr14:69729876-69730601	SK-N-SH	brain:	n/a	chr14:69730215-69730231
11	MAX	chr14:69729940-69730503	SK-N-SH	brain:	n/a	n/a
12	MAX	chr14:69730001-69730520	SK-N-SH	brain:	n/a	n/a
13	FOS	chr14:69730124-69730350	MCF10A-Er-Src	breast:	n/a	n/a
14	EBF1	chr14:69730134-69730428	GM12878	blood:	n/a	chr14:69730257-69730268 chr14:69730257-69730267 chr14:69730258-69730267
15	POLR2A	chr14:69730036-69730361	SK-N-SH	brain:	n/a	n/a
16	JUND	chr14:69729938-69730558	SK-N-SH	brain:	n/a	n/a
17	POLR2A	chr14:69730048-69730476	U87	brain:	n/a	n/a
18	JUND	chr14:69729765-69730654	SK-N-SH	brain:	n/a	n/a
19	JUND	chr14:69729943-69730527	SK-N-SH	brain:	n/a	n/a
20	MXI1	chr14:69729765-69730659	SK-N-SH	brain:	n/a	chr14:69730408-69730423
21	TCF12	chr14:69729802-69730705	SK-N-SH	brain:	n/a	n/a
22	SIN3AK20	chr14:69730031-69730407	SK-N-SH	brain:	n/a	n/a
23	NFIC	chr14:69729957-69730536	SK-N-SH	brain:	n/a	n/a
24	STAT3	chr14:69730178-69730418	MCF10A-Er-Src	breast:	n/a	chr14:69730285-69730297
25	TCF12	chr14:69729814-69730629	SK-N-SH	brain:	n/a	n/a
26	FOS	chr14:69730089-69730381	MCF10A-Er-Src	breast:	n/a	n/a
27	EBF1	chr14:69730104-69730430	GM12878	blood:	n/a	chr14:69730257-69730268 chr14:69730257-69730267 chr14:69730258-69730267
28	PBX3	chr14:69729965-69730534	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:69716336..69718485-chr14:69728021..69730750,2	MCF-7	breast:
2	chr14:69727858..69730581-chr14:69738722..69740609,2	MCF-7	breast:
3	chr14:69728770..69731515-chr14:69782334..69785257,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258520	TF binding region

rs_ID	r²[population]
rs74059925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74059929	1.00[AMR][1000 genomes]

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69728200-69730400	Enhancers	HSMMtube	muscle
2	chr14:69728200-69732200	Weak transcription	Aorta	Aorta
3	chr14:69728400-69730800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:69728400-69733400	Weak transcription	Pancreas	Pancrea
5	chr14:69728600-69730400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:69728600-69730600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr14:69728600-69730800	Enhancers	Right Atrium	heart
8	chr14:69728800-69730600	Enhancers	Fetal Brain Male	brain
9	chr14:69728800-69730800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:69728800-69731000	Enhancers	Adipose Nuclei	Adipose
11	chr14:69728800-69731200	Enhancers	NHLF	lung
12	chr14:69729000-69730600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
13	chr14:69729000-69730800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:69729000-69731200	Enhancers	Osteobl	bone
15	chr14:69729000-69737600	Weak transcription	Spleen	Spleen
16	chr14:69729200-69730400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:69729200-69731600	Enhancers	Fetal Intestine Small	intestine
18	chr14:69729200-69734400	Weak transcription	Fetal Heart	heart
19	chr14:69729200-69737600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr14:69729400-69730400	Enhancers	NHDF-Ad	bronchial
21	chr14:69729400-69730600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:69729400-69730600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:69729400-69736000	Enhancers	Fetal Intestine Large	intestine
24	chr14:69729400-69737800	Weak transcription	Fetal Brain Female	brain
25	chr14:69729600-69736000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:69729800-69730400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:69729800-69730400	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr14:69729800-69730600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:69729800-69730800	Enhancers	NH-A	brain
30	chr14:69730000-69730400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:69730000-69730800	Enhancers	Brain Angular Gyrus	brain
32	chr14:69730000-69731200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:69730200-69730400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:69730200-69730400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:69730200-69730600	Active TSS	Brain Anterior Caudate	brain
36	chr14:69730200-69730800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr14:69730200-69730800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr14:69730200-69730800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:69730200-69730800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr14:69730200-69730800	Enhancers	Left Ventricle	heart
41	chr14:69730200-69730800	Enhancers	Right Ventricle	heart
42	chr14:69730200-69730800	Flanking Active TSS	HSMM	muscle

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