Variant report

Variant	rs74060378
Chromosome Location	chr12:10544772-10544773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr12:10544425-10545540	Hela-S3	cervix:	n/a	chr12:10545028-10545036
2	FOS	chr12:10544703-10545920	MCF10A-Er-Src	breast:	n/a	n/a
3	TBP	chr12:10544509-10545707	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr12:10544711-10545499	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr12:10544408-10545504	Hela-S3	cervix:	n/a	n/a
6	STAT3	chr12:10544355-10545464	Hela-S3	cervix:	n/a	n/a
7	FOS	chr12:10544735-10545683	MCF10A-Er-Src	breast:	n/a	n/a
8	CHD1	chr12:10544688-10545462	GM12878	blood:	n/a	n/a
9	RUNX3	chr12:10544768-10545745	GM12878	blood:	n/a	n/a
10	NFIC	chr12:10544735-10545701	ECC-1	luminal epithelium:	n/a	n/a
11	MAFK	chr12:10544770-10545649	Hela-S3	cervix:	n/a	chr12:10545496-10545507 chr12:10545495-10545510
12	EP300	chr12:10544427-10545590	Hela-S3	cervix:	n/a	chr12:10545485-10545499

Variant related genes	Relation type
KLRK1	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74060366	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv898759	chr12:10454556-10583365	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv898760	chr12:10492982-10564329	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv898761	chr12:10496724-10564329	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1036390	chr12:10496724-10596720	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv557455	chr12:10508975-10560957	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv898762	chr12:10509383-10564329	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv898763	chr12:10514528-10603670	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv8914	chr12:10532300-10662676	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv557456	chr12:10532326-10698255	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv898764	chr12:10537269-10698255	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv898765	chr12:10537269-10701992	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv898766	chr12:10537269-10722585	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	nsv430461	chr12:10539815-10554033	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10519600-10547800	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:10525400-10547200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:10534800-10548800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:10538400-10544800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:10542000-10549200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:10542800-10547800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr12:10543000-10545400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr12:10543800-10547600	Enhancers	Hela-S3	cervix
9	chr12:10543800-10547800	Enhancers	Primary B cells from cord blood	blood
10	chr12:10544000-10545000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr12:10544200-10548200	Enhancers	Primary T cells from cord blood	blood
12	chr12:10544400-10544800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr12:10544400-10544800	Enhancers	Adipose Nuclei	Adipose
14	chr12:10544400-10544800	Enhancers	HMEC	breast
15	chr12:10544400-10545000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:10544400-10545000	Enhancers	A549	lung
17	chr12:10544400-10545200	Enhancers	GM12878-XiMat	blood
18	chr12:10544400-10545400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr12:10544400-10545800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr12:10544400-10545800	Enhancers	Primary hematopoietic stem cells	blood
21	chr12:10544400-10545800	Enhancers	Osteobl	bone
22	chr12:10544400-10546000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:10544400-10546200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr12:10544400-10546200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr12:10544400-10547800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr12:10544400-10548200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr12:10544400-10550800	Enhancers	Primary B cells from peripheral blood	blood
28	chr12:10544600-10545000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
29	chr12:10544600-10545000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr12:10544600-10545200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr12:10544600-10545400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr12:10544600-10545400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr12:10544600-10545400	Flanking Active TSS	NHEK	skin
34	chr12:10544600-10545600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr12:10544600-10545800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr12:10544600-10545800	Enhancers	HSMM	muscle
37	chr12:10544600-10548800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr12:10544600-10549000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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