Variant report

Variant	rs74060579
Chromosome Location	chr12:10280977-10280978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56076147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58099478	1.00[EUR][1000 genomes]
rs7298669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10264600-10281000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:10278600-10282400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:10280000-10282000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
4	chr12:10280400-10281000	Enhancers	Primary hematopoietic stem cells	blood
5	chr12:10280400-10281000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:10280400-10282800	Active TSS	Brain Hippocampus Middle	brain
7	chr12:10280600-10281200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr12:10280600-10283200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr12:10280600-10284600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:10280800-10281400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr12:10280800-10281600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr12:10280800-10282800	Active TSS	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links