Variant report

Variant	rs74065439
Chromosome Location	chr14:71273175-71273176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71248666..71250667-chr14:71272733..71274466,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006432	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10132278	1.00[AMR][1000 genomes]
rs10133398	1.00[AMR][1000 genomes]
rs10136593	1.00[AMR][1000 genomes]
rs10139870	1.00[AMR][1000 genomes]
rs10142606	1.00[AMR][1000 genomes]
rs10144526	1.00[AMR][1000 genomes]
rs10145450	1.00[AMR][1000 genomes]
rs10148594	1.00[AMR][1000 genomes]
rs10149857	1.00[AMR][1000 genomes]
rs10150003	1.00[AMR][1000 genomes]
rs28401611	1.00[AMR][1000 genomes]
rs28453676	1.00[AMR][1000 genomes]
rs28659887	1.00[AMR][1000 genomes]
rs28824190	1.00[AMR][1000 genomes]
rs59943463	1.00[AMR][1000 genomes]
rs61425260	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1049741	chr14:71233043-71462509	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71222600-71274600	Weak transcription	Hela-S3	cervix
2	chr14:71247800-71274600	Weak transcription	Stomach Mucosa	stomach
3	chr14:71249400-71274400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr14:71249400-71274400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:71249400-71274600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:71249600-71274600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:71249800-71274600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:71257200-71274600	Weak transcription	Brain Anterior Caudate	brain
9	chr14:71257200-71274600	Weak transcription	Spleen	Spleen
10	chr14:71257800-71274800	Weak transcription	Colonic Mucosa	Colon
11	chr14:71259000-71274600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr14:71260000-71274800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:71261200-71274600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:71265000-71274600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr14:71265200-71274600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:71265800-71274600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:71267400-71274600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr14:71267600-71274400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr14:71267600-71274400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:71267600-71274600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:71267600-71274600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:71267600-71274600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:71267600-71274600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:71267600-71274600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr14:71267600-71274600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr14:71267800-71273800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr14:71267800-71274400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:71267800-71274400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:71267800-71274400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr14:71267800-71274400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr14:71267800-71274400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr14:71267800-71274400	Weak transcription	Brain Germinal Matrix	brain
33	chr14:71267800-71274400	Weak transcription	Fetal Brain Female	brain
34	chr14:71267800-71274400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr14:71267800-71274400	Weak transcription	Dnd41	blood
36	chr14:71267800-71274600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:71267800-71274600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:71267800-71274600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr14:71268000-71274400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr14:71268000-71274400	Weak transcription	A549	lung
41	chr14:71268000-71274600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr14:71268600-71273800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr14:71268800-71273400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr14:71268800-71274600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr14:71268800-71274600	Weak transcription	Fetal Intestine Small	intestine
46	chr14:71268800-71274600	Weak transcription	Pancreas	Pancrea
47	chr14:71268800-71275000	Weak transcription	Gastric	stomach
48	chr14:71269200-71274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr14:71269200-71274800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:71269800-71274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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