Variant report

Variant	rs74067611
Chromosome Location	chr12:21851082-21851083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:21850626..21851532-chr12:22142558..22143243,3	MCF-7	breast:
2	chr12:21850822..21851409-chr12:22142489..22143205,3	MCF-7	breast:
3	chr12:21804446..21806514-chr12:21850496..21852236,2	K562	blood:
4	chr12:21766840..21767748-chr12:21850564..21851388,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs16924221	1.00[AMR][1000 genomes]
rs16924224	1.00[EUR][1000 genomes]
rs1813751	1.00[AMR][1000 genomes]
rs2081819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2217238	1.00[AMR][1000 genomes]
rs55713096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55920669	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56013787	1.00[AMR][1000 genomes]
rs56035640	1.00[AMR][1000 genomes]
rs56055068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56066637	1.00[AMR][1000 genomes]
rs56160727	1.00[AMR][1000 genomes]
rs56871137	1.00[AMR][1000 genomes]
rs57115374	1.00[AMR][1000 genomes]
rs57338327	1.00[AMR][1000 genomes]
rs58998049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59046730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59468844	1.00[AMR][1000 genomes]
rs59522091	1.00[EUR][1000 genomes]
rs60365478	1.00[EUR][1000 genomes]
rs60462646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60632805	1.00[AMR][1000 genomes]
rs61187969	1.00[AMR][1000 genomes]
rs61482461	1.00[AMR][1000 genomes]
rs71053337	0.86[AFR][1000 genomes]
rs7133951	1.00[AMR][1000 genomes]
rs7136997	1.00[AMR][1000 genomes]
rs72554071	1.00[EUR][1000 genomes]
rs74066743	1.00[EUR][1000 genomes]
rs74066745	1.00[EUR][1000 genomes]
rs74067603	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74067604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74067606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74067608	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74067609	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74067610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74069345	1.00[AMR][1000 genomes]
rs74069349	1.00[AMR][1000 genomes]
rs74069350	1.00[AMR][1000 genomes]
rs74069351	1.00[AMR][1000 genomes]
rs74069353	1.00[AMR][1000 genomes]
rs74069355	1.00[AMR][1000 genomes]
rs74069356	1.00[AMR][1000 genomes]
rs74069357	1.00[AMR][1000 genomes]
rs74069365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74069366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043936	chr12:21562673-21979030	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv469164	chr12:21688900-21966701	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv557744	chr12:21688900-21966701	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv832349	chr12:21749093-21930695	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21844800-21852600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr12:21845200-21852600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr12:21849000-21851600	Enhancers	NHDF-Ad	bronchial
4	chr12:21850400-21851200	Enhancers	Fetal Muscle Leg	muscle
5	chr12:21850600-21851200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr12:21850800-21851200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr12:21851000-21851200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:21851000-21851200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
9	chr12:21851000-21851200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:21851000-21851200	Active TSS	Liver	Liver
11	chr12:21851000-21851200	Enhancers	Colon Smooth Muscle	Colon
12	chr12:21851000-21851200	Enhancers	Fetal Intestine Small	intestine
13	chr12:21851000-21851200	Active TSS	Fetal Lung	lung
14	chr12:21851000-21851200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr12:21851000-21851200	Enhancers	Rectal Smooth Muscle	rectum
16	chr12:21851000-21851400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:21851000-21851400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr12:21851000-21851400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr12:21851000-21851400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr12:21851000-21851400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:21851000-21851400	Active TSS	Adipose Nuclei	Adipose
22	chr12:21851000-21851400	Active TSS	Brain Anterior Caudate	brain
23	chr12:21851000-21851400	Active TSS	Brain Hippocampus Middle	brain
24	chr12:21851000-21851400	Flanking Active TSS	Fetal Kidney	kidney
25	chr12:21851000-21851400	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr12:21851000-21851400	Enhancers	Fetal Stomach	stomach
27	chr12:21851000-21851400	Active TSS	Ovary	ovary
28	chr12:21851000-21851400	Active TSS	Right Atrium	heart
29	chr12:21851000-21851400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr12:21851000-21851400	Enhancers	Osteobl	bone
31	chr12:21851000-21851600	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links