Variant report

Variant	rs74068091
Chromosome Location	chr14:80050910-80050911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11847465	1.00[AMR][1000 genomes]
rs11848738	1.00[AMR][1000 genomes]
rs11852085	1.00[AMR][1000 genomes]
rs55708063	1.00[AMR][1000 genomes]
rs57252489	1.00[AMR][1000 genomes]
rs57281369	1.00[AMR][1000 genomes]
rs57656995	1.00[AMR][1000 genomes]
rs58351352	1.00[AMR][1000 genomes]
rs58357059	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59078244	1.00[AMR][1000 genomes]
rs59472910	1.00[AMR][1000 genomes]
rs59809006	1.00[AMR][1000 genomes]
rs60115863	0.96[AFR][1000 genomes]
rs60319911	1.00[AMR][1000 genomes]
rs60502118	1.00[AMR][1000 genomes]
rs60734338	1.00[AMR][1000 genomes]
rs61002775	1.00[AMR][1000 genomes]
rs61029849	1.00[AMR][1000 genomes]
rs61309702	1.00[AMR][1000 genomes]
rs72696784	1.00[AMR][1000 genomes]
rs74068005	1.00[AMR][1000 genomes]
rs74068052	1.00[AMR][1000 genomes]
rs74068054	1.00[AMR][1000 genomes]
rs74068066	1.00[AMR][1000 genomes]
rs74068069	1.00[AMR][1000 genomes]
rs74068072	1.00[AMR][1000 genomes]
rs74068696	1.00[AMR][1000 genomes]
rs74070211	1.00[AMR][1000 genomes]
rs74070212	1.00[AMR][1000 genomes]
rs74070239	1.00[AMR][1000 genomes]
rs74070242	1.00[AMR][1000 genomes]
rs74070257	1.00[AMR][1000 genomes]
rs74070258	1.00[AMR][1000 genomes]
rs74070263	1.00[AMR][1000 genomes]
rs74070265	1.00[AMR][1000 genomes]
rs74070266	1.00[AMR][1000 genomes]
rs74070271	1.00[AMR][1000 genomes]
rs74070273	1.00[AMR][1000 genomes]
rs74070276	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80011800-80069200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80042200-80051200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:80045000-80052200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:80045000-80052200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:80045200-80057000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:80045200-80062200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:80047200-80052400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:80047400-80052200	Weak transcription	Fetal Heart	heart
9	chr14:80047400-80057000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:80047600-80052200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:80047600-80068800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:80047800-80052200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:80048000-80051000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:80048000-80053800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr14:80048200-80052400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:80048200-80053400	Enhancers	NHEK	skin
17	chr14:80048400-80053600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:80048400-80053600	Enhancers	Osteobl	bone
19	chr14:80048400-80054200	Enhancers	NHLF	lung
20	chr14:80049000-80053200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:80049200-80053800	Enhancers	NH-A	brain
22	chr14:80049400-80052200	Weak transcription	HMEC	breast
23	chr14:80049400-80052400	Enhancers	HSMMtube	muscle
24	chr14:80049400-80053400	Enhancers	HSMM	muscle
25	chr14:80049600-80053800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr14:80050200-80051000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:80050400-80051200	Enhancers	NHDF-Ad	bronchial
28	chr14:80050400-80051600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr14:80050400-80052000	Weak transcription	Fetal Lung	lung
30	chr14:80050400-80054000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:80050400-80054200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:80050600-80051200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:80050600-80051200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:80050600-80051200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:80050600-80051400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr14:80050600-80051800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr14:80050800-80051000	Flanking Active TSS	A549	lung
38	chr14:80050800-80051200	Enhancers	H1 Cell Line	embryonic stem cell
39	chr14:80050800-80051200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:80050800-80051200	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr14:80050800-80051200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:80050800-80051200	Flanking Active TSS	Hela-S3	cervix
43	chr14:80050800-80051600	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr14:80050800-80051600	Enhancers	Placenta Amnion	Placenta Amnion
45	chr14:80050800-80053400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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