Variant report

Variant	rs74072800
Chromosome Location	chr13:49844662-49844663
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49839099..49842026-chr13:49843722..49845572,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56132124	1.00[AMR][1000 genomes]
rs74072504	1.00[AMR][1000 genomes]
rs74074520	1.00[AMR][1000 genomes]
rs7989586	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv832607	chr13:49756458-49920894	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900069	chr13:49815405-49976393	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49823800-49855400	Weak transcription	Small Intestine	intestine
2	chr13:49826600-49877800	Weak transcription	Psoas Muscle	Psoas
3	chr13:49831200-49845200	Weak transcription	NH-A	brain
4	chr13:49832800-49844800	Strong transcription	Dnd41	blood
5	chr13:49832800-49860600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr13:49832800-49862800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr13:49833000-49865600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr13:49833200-49852600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr13:49833200-49863800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr13:49833200-49866600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr13:49834000-49846400	Weak transcription	Pancreas	Pancrea
12	chr13:49834200-49855600	Weak transcription	Fetal Intestine Small	intestine
13	chr13:49834200-49875200	Weak transcription	Gastric	stomach
14	chr13:49834600-49845600	Weak transcription	Fetal Kidney	kidney
15	chr13:49834600-49867000	Weak transcription	Thymus	Thymus
16	chr13:49834800-49853200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:49834800-49873000	Weak transcription	HMEC	breast
18	chr13:49834800-49875400	Weak transcription	Esophagus	oesophagus
19	chr13:49835200-49846800	Weak transcription	HepG2	liver
20	chr13:49835400-49862200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr13:49835600-49846600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr13:49835600-49846800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:49835600-49866800	Weak transcription	Brain Angular Gyrus	brain
24	chr13:49835600-49866800	Weak transcription	Brain Germinal Matrix	brain
25	chr13:49835600-49867000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr13:49835600-49867000	Weak transcription	Fetal Brain Male	brain
27	chr13:49835800-49845600	Weak transcription	Fetal Heart	heart
28	chr13:49835800-49853000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr13:49835800-49863600	Weak transcription	Right Ventricle	heart
30	chr13:49835800-49875200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr13:49835800-49875200	Weak transcription	GM12878-XiMat	blood
32	chr13:49836000-49851800	Weak transcription	Placenta	Placenta
33	chr13:49836000-49866800	Weak transcription	Colon Smooth Muscle	Colon
34	chr13:49836200-49856600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr13:49836200-49866800	Weak transcription	Brain Substantia Nigra	brain
36	chr13:49836600-49866800	Weak transcription	Brain Anterior Caudate	brain
37	chr13:49836600-49867000	Weak transcription	Primary B cells from cord blood	blood
38	chr13:49836600-49867000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr13:49837000-49852800	Weak transcription	Ovary	ovary
40	chr13:49837600-49858800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr13:49837800-49854600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr13:49837800-49866600	Weak transcription	Fetal Lung	lung
43	chr13:49838200-49845400	Weak transcription	NHDF-Ad	bronchial
44	chr13:49838400-49853000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr13:49838600-49875400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr13:49840200-49846000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr13:49840600-49846000	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr13:49840800-49844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr13:49842200-49846000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr13:49842600-49845000	Weak transcription	Fetal Brain Female	brain

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