Variant report

Variant	rs74074180
Chromosome Location	chr13:48852289-48852290
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6561445	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7338799	0.83[AFR][1000 genomes]
rs74074185	0.98[AFR][1000 genomes]
rs74074186	0.86[AFR][1000 genomes]
rs74074193	0.83[AFR][1000 genomes]
rs7984790	0.86[AFR][1000 genomes]
rs7985858	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7993008	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48837800-48853000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:48837800-48856400	Weak transcription	Colon Smooth Muscle	Colon
3	chr13:48838000-48852800	Weak transcription	HUVEC	blood vessel
4	chr13:48841800-48853200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:48844200-48853000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr13:48844400-48853000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:48844400-48853000	Weak transcription	Brain Anterior Caudate	brain
8	chr13:48844400-48853000	Weak transcription	Fetal Muscle Leg	muscle
9	chr13:48844400-48857600	Weak transcription	HSMMtube	muscle
10	chr13:48844400-48877200	Weak transcription	Aorta	Aorta
11	chr13:48847800-48853000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:48848000-48853000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:48848000-48853000	Weak transcription	Brain Hippocampus Middle	brain
14	chr13:48848000-48853000	Weak transcription	Brain Substantia Nigra	brain
15	chr13:48852000-48853400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr13:48852200-48853600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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