Variant report
Variant | rs74075504 |
---|---|
Chromosome Location | chr12:33249576-33249577 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr12:32907923..32910854-chr12:33249270..33250898,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000139131 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11052417 | 1.00[AMR][1000 genomes] |
rs11830832 | 1.00[AMR][1000 genomes] |
rs11838080 | 1.00[AMR][1000 genomes] |
rs55671927 | 1.00[AMR][1000 genomes] |
rs55825139 | 1.00[AMR][1000 genomes] |
rs56287051 | 1.00[AMR][1000 genomes] |
rs58598352 | 1.00[AMR][1000 genomes] |
rs59120557 | 1.00[AMR][1000 genomes] |
rs61063710 | 1.00[AMR][1000 genomes] |
rs74072482 | 1.00[AMR][1000 genomes] |
rs74072753 | 1.00[AMR][1000 genomes] |
rs74072985 | 1.00[AMR][1000 genomes] |
rs74072990 | 1.00[AMR][1000 genomes] |
rs74074808 | 1.00[AMR][1000 genomes] |
rs74074827 | 1.00[AMR][1000 genomes] |
rs74074828 | 1.00[AMR][1000 genomes] |
rs74074832 | 1.00[AMR][1000 genomes] |
rs74075503 | 1.00[AMR][1000 genomes] |
rs7964975 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530421 | chr12:32825335-33465991 | Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
2 | nsv832367 | chr12:33063644-33298967 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv1053849 | chr12:33132909-33279169 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv1044931 | chr12:33179957-33307362 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |