Variant report

Variant	rs740757
Chromosome Location	chr3:53553745-53553746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:53553264..53553901-chr3:53741724..53742273,2	MCF-7	breast:
2	chr3:53553135..53553983-chr3:53584999..53585589,3	MCF-7	breast:
3	chr3:53553135..53554029-chr3:53584915..53585873,10	MCF-7	breast:
4	chr3:53552367..53553946-chr3:53584985..53585902,8	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17053118	1.00[JPT][hapmap]
rs312481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs312486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774426	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv3434928	chr3:53550812-53554010	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53540600-53560000	Weak transcription	Pancreas	Pancrea
2	chr3:53551200-53554400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:53551400-53559000	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:53551400-53559800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:53552000-53554000	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr3:53552000-53554000	Flanking Active TSS	Hela-S3	cervix
7	chr3:53552000-53554400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:53552200-53555000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:53552400-53554000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr3:53552400-53568400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:53552600-53560200	Weak transcription	Lung	lung
12	chr3:53552800-53554000	Enhancers	Stomach Smooth Muscle	stomach
13	chr3:53553200-53554000	Weak transcription	Brain Anterior Caudate	brain
14	chr3:53553200-53554400	Genic enhancers	Fetal Lung	lung
15	chr3:53553200-53556200	Weak transcription	Liver	Liver
16	chr3:53553200-53557000	Weak transcription	Ovary	ovary
17	chr3:53553200-53557400	Weak transcription	Spleen	Spleen
18	chr3:53553400-53553800	Weak transcription	Fetal Intestine Large	intestine
19	chr3:53553400-53556200	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:53553400-53557000	Weak transcription	Fetal Stomach	stomach
21	chr3:53553400-53562800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:53553600-53553800	Active TSS	A549	lung
23	chr3:53553600-53557200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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