Variant report

Variant	rs74078141
Chromosome Location	chr12:29544147-29544148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs35183403	1.00[AMR][1000 genomes]
rs57967706	0.90[AFR][1000 genomes]
rs58244411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58552561	0.92[AFR][1000 genomes]
rs59173481	0.87[AFR][1000 genomes]
rs59368526	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59442924	0.90[AFR][1000 genomes]
rs60044892	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60675725	0.95[AFR][1000 genomes]
rs60697326	0.90[AFR][1000 genomes]
rs61447708	0.87[AFR][1000 genomes]
rs7342354	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74076684	0.85[AFR][1000 genomes]
rs74076962	0.82[AFR][1000 genomes]
rs74077152	0.95[AFR][1000 genomes]
rs74078140	0.95[AFR][1000 genomes]
rs74078154	1.00[AMR][1000 genomes]
rs74078156	1.00[AMR][1000 genomes]
rs74078157	1.00[AMR][1000 genomes]
rs74078380	0.90[AFR][1000 genomes]
rs74078381	0.90[AFR][1000 genomes]
rs878838	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv975466	chr12:29541892-29547802	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29542600-29544200	Enhancers	Hela-S3	cervix
2	chr12:29542800-29544400	Enhancers	Primary T cells from cord blood	blood
3	chr12:29542800-29544400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr12:29542800-29544400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr12:29542800-29544600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr12:29543000-29544200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr12:29543000-29544200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr12:29543400-29544200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr12:29543400-29545000	Enhancers	HepG2	liver
10	chr12:29543600-29544400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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