Variant report

Variant	rs74079983
Chromosome Location	chr13:51447667-51447668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55683996	0.89[AMR][1000 genomes]
rs55784050	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57318839	0.89[AMR][1000 genomes]
rs59951652	0.88[AFR][1000 genomes]
rs74079976	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74079988	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	nsv526999	chr13:51440933-51452751	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51442800-51449800	Weak transcription	Dnd41	blood
2	chr13:51447200-51448400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:51447600-51448200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:51447600-51448200	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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