Variant report
| Variant | rs74080851 |
|---|---|
| Chromosome Location | chr13:62020082-62020083 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:62018252..62020987-chr19:47730290..47733067,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000105327 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs2876810 | 1.00[AMR][1000 genomes] |
| rs4447303 | 1.00[AMR][1000 genomes] |
| rs4468495 | 1.00[AMR][1000 genomes] |
| rs4474590 | 1.00[AMR][1000 genomes] |
| rs4592536 | 1.00[AMR][1000 genomes] |
| rs61320353 | 1.00[AMR][1000 genomes] |
| rs61601007 | 1.00[AMR][1000 genomes] |
| rs74080842 | 0.84[AFR][1000 genomes] |
| rs74080845 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74080846 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74080852 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74080877 | 1.00[AMR][1000 genomes] |
| rs74080878 | 1.00[AMR][1000 genomes] |
| rs74081855 | 1.00[AMR][1000 genomes] |
| rs74081856 | 1.00[AMR][1000 genomes] |
| rs74081857 | 1.00[AMR][1000 genomes] |
| rs74081859 | 1.00[AMR][1000 genomes] |
| rs74081866 | 1.00[AMR][1000 genomes] |
| rs74081868 | 1.00[AMR][1000 genomes] |
| rs74081869 | 1.00[AMR][1000 genomes] |
| rs74081870 | 1.00[AMR][1000 genomes] |
| rs74081871 | 1.00[AMR][1000 genomes] |
| rs74081873 | 1.00[AMR][1000 genomes] |
| rs74081875 | 1.00[AMR][1000 genomes] |
| rs74081876 | 1.00[AMR][1000 genomes] |
| rs74081877 | 1.00[AMR][1000 genomes] |
| rs74081878 | 1.00[AMR][1000 genomes] |
| rs74081879 | 1.00[AMR][1000 genomes] |
| rs74081880 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900245 | chr13:61873379-62057698 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv948661 | chr13:61906251-62179649 | Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2761266 | chr13:61928642-62690828 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv832628 | chr13:61985540-62153692 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv948810 | chr13:62003256-62968196 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:62019800-62021800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
