Variant report

Variant	rs74081858
Chromosome Location	chr13:62062495-62062496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2876810	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4447303	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4468495	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4474590	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4592536	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61320353	0.97[AFR][1000 genomes]
rs61516499	1.00[ASN][1000 genomes]
rs61601007	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74080877	1.00[AFR][1000 genomes]
rs74080878	1.00[AFR][1000 genomes]
rs74081855	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081856	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081857	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081859	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081866	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081868	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081869	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081870	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081871	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081873	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081875	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081876	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081877	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081878	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081879	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74081880	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948661	chr13:61906251-62179649	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv832628	chr13:61985540-62153692	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1054037	chr13:62058336-62094775	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62061600-62063200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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