Variant report

Variant	rs74084894
Chromosome Location	chr13:52094329-52094330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52093545..52096468-chr13:52097107..52099629,3	MCF-7	breast:
2	chr13:52025069..52031067-chr13:52092672..52100320,19	MCF-7	breast:
3	chr13:52021229..52031054-chr13:52088479..52100505,23	MCF-7	breast:
4	chr13:52093719..52095925-chr13:52134002..52136713,2	MCF-7	breast:
5	chr13:52093115..52097623-chr13:52157437..52160245,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000139668	Chromatin interaction

rs_ID	r²[population]
rs55827328	1.00[AFR][1000 genomes]
rs56390624	1.00[AFR][1000 genomes]
rs58114504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59125421	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74084898	1.00[AFR][1000 genomes]
rs7491674	1.00[AMR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52090000-52097400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:52092000-52095400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:52092200-52094600	Enhancers	NHDF-Ad	bronchial
4	chr13:52092200-52094800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:52092400-52094600	Enhancers	HSMM	muscle
6	chr13:52092400-52094800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:52092400-52094800	Enhancers	Osteobl	bone
8	chr13:52092400-52095000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:52092400-52095000	Enhancers	HMEC	breast
10	chr13:52092400-52095200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:52092600-52094800	Enhancers	Fetal Muscle Leg	muscle
12	chr13:52092600-52095200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr13:52092800-52094800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:52092800-52094800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:52092800-52094800	Enhancers	NHEK	skin
16	chr13:52093000-52094600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:52093000-52094800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:52093000-52094800	Enhancers	NH-A	brain
19	chr13:52093000-52095000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:52093000-52095600	Enhancers	Primary T cells from cord blood	blood
21	chr13:52093200-52097000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr13:52093200-52097200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr13:52093400-52096000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr13:52093400-52096200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr13:52093400-52097000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr13:52093400-52097000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr13:52093400-52097000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr13:52093400-52097200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr13:52093600-52094800	Flanking Active TSS	Liver	Liver
30	chr13:52093800-52095000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr13:52093800-52097000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr13:52093800-52097800	Enhancers	HepG2	liver
33	chr13:52094000-52094400	Enhancers	Hela-S3	cervix
34	chr13:52094200-52094400	Enhancers	A549	lung
35	chr13:52094200-52097200	Weak transcription	NHLF	lung

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