Variant report

Variant	rs74085205
Chromosome Location	chr14:104045002-104045003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104040497..104046116-chr14:104179984..104183762,7	MCF-7	breast:
2	chr14:104037950..104041311-chr14:104041482..104045327,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100711	Chromatin interaction
ENSG00000256053	Chromatin interaction
ENSG00000126215	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55967910	0.96[AFR][1000 genomes]
rs58810431	1.00[AFR][1000 genomes]
rs74085203	1.00[AFR][1000 genomes]
rs74085211	1.00[AFR][1000 genomes]
rs74088027	0.96[AFR][1000 genomes]
rs74088030	0.96[AFR][1000 genomes]
rs74088034	0.96[AFR][1000 genomes]
rs74088040	0.96[AFR][1000 genomes]
rs74088041	0.96[AFR][1000 genomes]
rs74088043	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902298	chr14:103959289-104061646	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv902299	chr14:103967504-104061646	Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
7	nsv902304	chr14:103979953-104061646	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv902305	chr14:103979953-104073551	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv566022	chr14:104007555-104092789	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104030800-104073200	Weak transcription	Small Intestine	intestine
2	chr14:104035400-104060400	Weak transcription	Fetal Brain Male	brain
3	chr14:104037400-104048400	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr14:104037800-104045400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:104038000-104045600	Strong transcription	Primary B cells from peripheral blood	blood
6	chr14:104038000-104045600	Strong transcription	Dnd41	blood
7	chr14:104038400-104048800	Strong transcription	Fetal Brain Female	brain
8	chr14:104038400-104049400	Strong transcription	Primary T cells from cord blood	blood
9	chr14:104038800-104045600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr14:104038800-104045600	Strong transcription	HepG2	liver
11	chr14:104038800-104045600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr14:104038800-104046000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:104038800-104051000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr14:104039000-104045800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:104039000-104046400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:104039200-104045600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr14:104039400-104045600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:104039400-104045800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr14:104039600-104045400	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr14:104039800-104045600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr14:104040000-104045600	Strong transcription	Thymus	Thymus
22	chr14:104040200-104045600	Strong transcription	Primary B cells from cord blood	blood
23	chr14:104041000-104059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr14:104041000-104063200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:104041600-104056200	Weak transcription	K562	blood
26	chr14:104041600-104056400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:104041800-104052600	Weak transcription	Psoas Muscle	Psoas
28	chr14:104041800-104059600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:104041800-104060600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr14:104042200-104057200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:104042600-104045600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:104042800-104045400	Genic enhancers	Spleen	Spleen
33	chr14:104042800-104045600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:104043000-104045800	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr14:104043200-104045600	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr14:104043200-104046400	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr14:104043400-104045200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:104043400-104045600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr14:104043400-104049200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:104043400-104051200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:104043400-104051200	Strong transcription	Fetal Intestine Large	intestine
42	chr14:104043400-104052000	Strong transcription	Fetal Intestine Small	intestine
43	chr14:104043400-104056600	Weak transcription	Fetal Heart	heart
44	chr14:104043600-104045200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
45	chr14:104043600-104045200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr14:104043600-104045400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:104043600-104045600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr14:104043600-104048000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr14:104043600-104048400	Strong transcription	HSMM	muscle
50	chr14:104043800-104045400	Weak transcription	Hela-S3	cervix

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