Variant report

Variant	rs74085770
Chromosome Location	chr13:52979175-52979176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55671201	0.81[AFR][1000 genomes]
rs55693365	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55969238	0.81[AFR][1000 genomes]
rs56001930	0.81[AFR][1000 genomes]
rs56231934	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58231368	1.00[AMR][1000 genomes]
rs61143073	0.81[AFR][1000 genomes]
rs61412886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74085743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087076	0.81[AFR][1000 genomes]
rs74087078	0.81[AFR][1000 genomes]
rs74087084	0.81[AFR][1000 genomes]
rs74087087	0.81[AFR][1000 genomes]
rs74087092	0.81[AFR][1000 genomes]
rs74087093	0.81[AFR][1000 genomes]
rs74089431	1.00[AMR][1000 genomes]
rs74089439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52946200-52979200	Weak transcription	A549	lung
2	chr13:52968200-52979600	Weak transcription	Gastric	stomach
3	chr13:52970000-52979200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:52970000-52979400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr13:52970200-52979400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:52970200-52979400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr13:52971800-52979600	Weak transcription	Pancreas	Pancrea
8	chr13:52972000-52979600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:52972000-52979600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:52972200-52979200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:52972200-52979600	Weak transcription	Spleen	Spleen
12	chr13:52974000-52979400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr13:52974000-52979400	Weak transcription	Fetal Brain Female	brain
14	chr13:52977600-52979200	Weak transcription	Ovary	ovary
15	chr13:52978000-52979200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:52978000-52979400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr13:52978000-52979600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
18	chr13:52978000-52979600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
19	chr13:52978000-52979600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
20	chr13:52978000-52979800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr13:52978200-52979200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr13:52978200-52979400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
23	chr13:52978200-52979600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
24	chr13:52978200-52979600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:52978200-52979800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
26	chr13:52978200-52979800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr13:52978200-52979800	Flanking Active TSS	HUVEC	blood vessel
28	chr13:52978200-52980000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
29	chr13:52978200-52980000	Active TSS	Lung	lung
30	chr13:52978200-52980800	Active TSS	Right Atrium	heart
31	chr13:52978200-52980800	Active TSS	HSMMtube	muscle
32	chr13:52978400-52979200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr13:52978400-52979600	Active TSS	Fetal Muscle Leg	muscle
34	chr13:52978400-52980000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr13:52978400-52980400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr13:52978400-52980800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr13:52978600-52979200	Active TSS	NHLF	lung
38	chr13:52978600-52979400	Active TSS	Brain Angular Gyrus	brain
39	chr13:52978600-52979400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
40	chr13:52978600-52979600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:52978600-52979600	Bivalent/Poised TSS	Fetal Kidney	kidney
42	chr13:52978600-52979600	Active TSS	Fetal Muscle Trunk	muscle
43	chr13:52978600-52979600	Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr13:52978600-52979600	Flanking Active TSS	NHEK	skin
45	chr13:52978600-52979800	Active TSS	Left Ventricle	heart
46	chr13:52978600-52979800	Active TSS	Psoas Muscle	Psoas
47	chr13:52978600-52980000	Active TSS	Right Ventricle	heart
48	chr13:52978600-52980000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
49	chr13:52978600-52980800	Active TSS	Brain Anterior Caudate	brain
50	chr13:52978600-52980800	Active TSS	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links