Variant report

Variant	rs74086986
Chromosome Location	chr14:104462365-104462366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104233292..104236251-chr14:104461397..104463914,2	MCF-7	breast:
2	chr14:104461872..104464135-chr14:104467416..104470134,3	K562	blood:
3	chr14:104461660..104464310-chr14:104577569..104579522,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166183	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11849381	1.00[AMR][1000 genomes]
rs11852063	1.00[AMR][1000 genomes]
rs56687774	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59108783	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60710970	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146464	1.00[AMR][1000 genomes]
rs73356331	1.00[AMR][1000 genomes]
rs74086988	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087001	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087002	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74088777	1.00[AMR][1000 genomes]
rs74089115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089126	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089148	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089150	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089153	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089170	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089177	0.84[AFR][1000 genomes]
rs8014686	1.00[AMR][1000 genomes]
rs8014751	1.00[AMR][1000 genomes]
rs9324065	1.00[AMR][1000 genomes]
rs9671937	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
5	nsv1048353	chr14:104361402-104483286	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv902322	chr14:104365310-104464809	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv902323	chr14:104381687-104464809	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv902324	chr14:104399640-104464809	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1049690	chr14:104411621-104575838	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv542208	chr14:104411621-104575838	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv526680	chr14:104427043-104568472	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1047990	chr14:104460605-104556463	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104456000-104465200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr14:104456400-104471600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr14:104456600-104470000	Weak transcription	Pancreas	Pancrea
4	chr14:104456600-104471400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr14:104457000-104476400	Weak transcription	Spleen	Spleen
6	chr14:104461200-104462400	Enhancers	HMEC	breast
7	chr14:104461200-104462600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:104461800-104466200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:104462200-104462400	Enhancers	Placenta Amnion	Placenta Amnion

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