Variant report

Variant	rs74087905
Chromosome Location	chr12:44403180-44403181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TWF1-1	chr12:44402423-44403946	NONHSAT027810

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11182381	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56040109	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56189744	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58729113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59110659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73087638	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73087652	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73087657	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73087667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73087672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73087678	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73087690	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73087697	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73087699	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73089709	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089717	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089758	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091731	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73091734	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs74084623	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74087909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44390800-44439200	Weak transcription	Esophagus	oesophagus
2	chr12:44394600-44403200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:44401400-44403600	ZNF genes & repeats	Fetal Intestine Large	intestine
4	chr12:44401400-44403800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:44401400-44404000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:44401600-44403400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr12:44401800-44403200	ZNF genes & repeats	HMEC	breast
8	chr12:44402000-44432200	Weak transcription	Aorta	Aorta
9	chr12:44402600-44403600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:44402800-44403800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:44402800-44414600	Weak transcription	HSMMtube	muscle

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