Variant report

Variant	rs74089563
Chromosome Location	chr1:72501046-72501047
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12065683	1.00[AMR][1000 genomes]
rs17091927	0.89[AFR][1000 genomes]
rs17092138	1.00[AFR][1000 genomes]
rs17092179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086910	1.00[AMR][1000 genomes]
rs74087197	1.00[AMR][1000 genomes]
rs74088180	1.00[AMR][1000 genomes]
rs74089558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089577	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817447	chr1:72098815-72558020	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv916783	chr1:72196061-72707953	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007910	chr1:72247302-72543998	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1007073	chr1:72419858-72734657	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv546478	chr1:72442018-72512391	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1006076	chr1:72477436-72700903	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv534996	chr1:72477436-72700903	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72499600-72501400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:72499800-72501400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:72499800-72501600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:72500000-72501200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:72500000-72501400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:72500600-72512600	Weak transcription	Pancreas	Pancrea
7	chr1:72500800-72501200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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