Variant report

Variant	rs74089873
Chromosome Location	chr1:73314936-73314937
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs74089861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74092220	0.91[AFR][1000 genomes]
rs74092221	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013549	chr1:73209040-73408373	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001105	chr1:73262558-73319499	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014200	chr1:73310043-73345847	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73313600-73317400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:73313800-73317400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:73314200-73315400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:73314400-73317200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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