Variant report

Variant	rs74090666
Chromosome Location	chr1:78056433-78056434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:78054448..78057258-chr1:78101287..78103947,2	K562	blood:
2	chr1:78053424..78055384-chr1:78055842..78057963,2	K562	blood:
3	chr1:78056022..78058450-chr1:78065873..78067883,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58120905	1.00[AFR][1000 genomes]
rs59338720	1.00[AFR][1000 genomes]
rs60000721	1.00[AFR][1000 genomes]
rs74090669	1.00[AFR][1000 genomes]
rs74090673	1.00[AFR][1000 genomes]
rs74090678	1.00[AFR][1000 genomes]
rs74090686	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv870709	chr1:78016517-78198322	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3337461	chr1:78036000-78153859	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78006200-78064400	Weak transcription	Stomach Mucosa	stomach
2	chr1:78024800-78071000	Weak transcription	Gastric	stomach
3	chr1:78032000-78062800	Weak transcription	Fetal Heart	heart
4	chr1:78032600-78070800	Weak transcription	Aorta	Aorta
5	chr1:78032800-78070600	Weak transcription	Small Intestine	intestine
6	chr1:78033000-78057000	Weak transcription	Spleen	Spleen
7	chr1:78033000-78057200	Weak transcription	Psoas Muscle	Psoas
8	chr1:78033200-78072600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:78033400-78057600	Weak transcription	Right Ventricle	heart
10	chr1:78033400-78069600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:78033600-78070800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:78038600-78071000	Weak transcription	Pancreas	Pancrea
13	chr1:78039000-78070800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:78042000-78070800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:78042000-78074600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:78042200-78073800	Weak transcription	Fetal Brain Female	brain
17	chr1:78043000-78070200	Weak transcription	Brain Substantia Nigra	brain
18	chr1:78044200-78069000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:78044400-78063000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:78047000-78070800	Weak transcription	Lung	lung
21	chr1:78047000-78071200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:78047600-78056600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:78047600-78056800	Weak transcription	K562	blood
24	chr1:78047600-78060200	Weak transcription	HUVEC	blood vessel
25	chr1:78047600-78061800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:78047600-78062200	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:78047600-78063000	Weak transcription	Fetal Brain Male	brain
28	chr1:78047600-78063200	Weak transcription	Brain Anterior Caudate	brain
29	chr1:78047600-78069000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:78047600-78070800	Weak transcription	HSMMtube	muscle
31	chr1:78047600-78071000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr1:78047600-78071600	Weak transcription	Thymus	Thymus
33	chr1:78047600-78072400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr1:78047600-78072600	Weak transcription	Fetal Kidney	kidney
35	chr1:78047600-78074600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr1:78047600-78074800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr1:78047600-78085600	Weak transcription	NHLF	lung
38	chr1:78047800-78058600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr1:78047800-78061800	Weak transcription	HSMM	muscle
40	chr1:78047800-78063000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr1:78047800-78063200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:78047800-78063200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr1:78047800-78070800	Weak transcription	Left Ventricle	heart
44	chr1:78047800-78070800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr1:78047800-78071000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr1:78047800-78074200	Weak transcription	Hela-S3	cervix
47	chr1:78047800-78074800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr1:78047800-78086200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr1:78047800-78090000	Weak transcription	NH-A	brain
50	chr1:78048000-78062600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links