Variant report

Variant	rs740913
Chromosome Location	chr17:34052874-34052875
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:34044710..34046597-chr17:34052337..34054242,2	K562	blood:
2	chr17:34052693..34055249-chr17:34130383..34133177,2	K562	blood:
3	chr17:34052461..34055326-chr17:34057428..34060444,5	K562	blood:

Variant related genes	Relation type
ENSG00000141150	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12103451	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12103729	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12150473	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12150480	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16971277	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34619890	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55898431	0.81[EUR][1000 genomes]
rs56056154	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56227129	0.81[ASN][1000 genomes]
rs56292300	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61515677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72828059	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72828073	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72828084	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72828093	0.81[EUR][1000 genomes]
rs9892037	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9892539	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9904187	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9906309	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9906872	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9908809	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9909815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911836	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908080	chr17:34027964-34054044	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33968000-34055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:34024200-34056200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:34032600-34055800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr17:34034800-34053400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr17:34034800-34055600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr17:34035400-34056200	Strong transcription	A549	lung
7	chr17:34035800-34053000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr17:34036000-34055600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr17:34036600-34055800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr17:34036800-34054800	Strong transcription	Primary B cells from peripheral blood	blood
11	chr17:34037000-34053000	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr17:34040200-34055000	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr17:34040400-34054400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:34040600-34054800	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr17:34040600-34055200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:34040600-34055600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr17:34040800-34053400	Strong transcription	Duodenum Mucosa	Duodenum
18	chr17:34040800-34054400	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr17:34040800-34054400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr17:34040800-34055000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr17:34040800-34055000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr17:34041400-34053000	Weak transcription	Right Atrium	heart
23	chr17:34042400-34053000	Strong transcription	K562	blood
24	chr17:34042800-34055400	Strong transcription	Primary T cells from cord blood	blood
25	chr17:34043600-34053800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr17:34043800-34054600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr17:34044800-34055800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr17:34045000-34058000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr17:34046000-34054800	Strong transcription	Dnd41	blood
30	chr17:34046600-34056200	Strong transcription	HMEC	breast
31	chr17:34047000-34053000	Strong transcription	Brain Cingulate Gyrus	brain
32	chr17:34048000-34053200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr17:34048200-34055400	Strong transcription	Primary B cells from cord blood	blood
34	chr17:34048400-34053000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr17:34048400-34055600	Strong transcription	Primary hematopoietic stem cells	blood
36	chr17:34048600-34053000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr17:34049600-34053000	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr17:34049600-34053600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr17:34049800-34053200	Strong transcription	GM12878-XiMat	blood
40	chr17:34050000-34053000	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr17:34050000-34053000	Strong transcription	Fetal Lung	lung
42	chr17:34050000-34053000	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr17:34050000-34053000	Strong transcription	NHEK	skin
44	chr17:34050000-34053200	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr17:34050000-34053600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr17:34050000-34054200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr17:34050000-34054200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr17:34050000-34055000	Strong transcription	Liver	Liver
49	chr17:34050200-34053000	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr17:34050200-34053000	Strong transcription	Colonic Mucosa	Colon

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