Variant report
Variant | rs74091759 |
---|---|
Chromosome Location | chr1:76045238-76045239 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | GATA2 | chr1:76044705-76045394 | HUVEC | blood vessel: | n/a | chr1:76044849-76044859 chr1:76044813-76044823 |
2 | POLR2A | chr1:76044683-76045248 | HUVEC | blood vessel: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000213579 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11586288 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs12406883 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs12406884 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1443845 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1576927 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17303788 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs17375756 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1930323 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2587032 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2587040 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2748444 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2748445 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2779490 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs35425390 | 0.86[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs4080327 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs55694101 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61653323 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6682395 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs6687877 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs74091760 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs74091761 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs74091769 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7541214 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv519329 | chr1:75830438-76358591 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
2 | esv3445096 | chr1:75933216-76126980 | Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | esv2757737 | chr1:75986904-76187748 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
4 | esv2758943 | chr1:75986904-76187748 | Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:76044800-76045600 | Enhancers | Fetal Kidney | kidney |
2 | chr1:76045200-76045800 | Enhancers | HUVEC | blood vessel |