Variant report

Variant	rs74092307
Chromosome Location	chr1:78309322-78309323
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:78302728..78305826-chr1:78308852..78311825,4	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56140793	1.00[AMR][1000 genomes]
rs57939520	1.00[AMR][1000 genomes]
rs59090864	1.00[AMR][1000 genomes]
rs59272007	1.00[AMR][1000 genomes]
rs6689686	1.00[AMR][1000 genomes]
rs74090656	1.00[AMR][1000 genomes]
rs74090677	1.00[AMR][1000 genomes]
rs74090699	1.00[AMR][1000 genomes]
rs74092311	1.00[AMR][1000 genomes]
rs74093219	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794082	chr1:78102426-78492221	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	esv3434340	chr1:78153780-78607103	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1004327	chr1:78212804-78352385	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1006600	chr1:78222312-78384009	Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv535011	chr1:78222312-78384009	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78252200-78315800	Weak transcription	Esophagus	oesophagus
2	chr1:78275000-78312800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr1:78280600-78325600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:78281200-78316400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:78282800-78353400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:78284600-78333000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:78285000-78310200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr1:78285600-78332000	Weak transcription	Spleen	Spleen
9	chr1:78286400-78333200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:78286600-78312800	Weak transcription	Thymus	Thymus
11	chr1:78286600-78328400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:78287400-78310800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:78290200-78334200	Weak transcription	Gastric	stomach
14	chr1:78295200-78318400	Weak transcription	Ovary	ovary
15	chr1:78296800-78329000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr1:78298400-78340400	Weak transcription	Colonic Mucosa	Colon
17	chr1:78298600-78327000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr1:78298600-78352400	Weak transcription	Right Ventricle	heart
19	chr1:78298800-78332800	Weak transcription	Fetal Kidney	kidney
20	chr1:78299000-78312000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr1:78299000-78315400	Weak transcription	Fetal Brain Female	brain
22	chr1:78299200-78314800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:78299400-78340200	Weak transcription	NHEK	skin
24	chr1:78299400-78341200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:78299600-78340200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:78299600-78343000	Weak transcription	K562	blood
27	chr1:78299600-78353800	Weak transcription	Brain Substantia Nigra	brain
28	chr1:78300000-78312800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:78300200-78310400	Weak transcription	Psoas Muscle	Psoas
30	chr1:78300200-78313200	Weak transcription	Pancreas	Pancrea
31	chr1:78300200-78331600	Weak transcription	Lung	lung
32	chr1:78300200-78332600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:78300800-78313400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:78300800-78320600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr1:78300800-78328800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr1:78300800-78342200	Weak transcription	Fetal Brain Male	brain
37	chr1:78301000-78312600	Weak transcription	HUVEC	blood vessel
38	chr1:78301000-78312800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr1:78301400-78311600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr1:78301400-78312800	Weak transcription	Adipose Nuclei	Adipose
41	chr1:78301400-78325600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr1:78301400-78332800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:78301400-78353200	Weak transcription	HSMMtube	muscle
44	chr1:78301800-78342400	Weak transcription	NHLF	lung
45	chr1:78302000-78332000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr1:78302200-78315800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr1:78302400-78312600	Weak transcription	Primary T cells from cord blood	blood
48	chr1:78302800-78334200	Weak transcription	HepG2	liver
49	chr1:78303200-78312200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr1:78303400-78312200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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